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.. bioframe documentation master file, created by
sphinx-quickstart on Sat Apr 11 11:44:26 2020.
You can adapt this file completely to your liking, but it should at least
contain the root `toctree` directive.
bioframe
========
`Bioframe <https://github.com/open2c/bioframe>`_ is a library to enable flexible and scalable operations on genomic interval dataframes in python. Building bioframe directly on top of `pandas <https://pandas.pydata.org/>`_ enables immediate access to a rich set of dataframe operations. Working in python enables rapid visualization and iteration of genomic analyses.
.. toctree::
:maxdepth: 1
:caption: Guide
guide-quickstart
guide-intervalops.md
guide-io.ipynb
guide-performance.ipynb
guide-recipes.md
guide-definitions
guide-specifications
.. toctree::
:maxdepth: 1
:caption: Tutorials
tutorials/tutorial_assign_motifs_to_peaks.ipynb
tutorials/tutorial_assign_peaks_to_genes.ipynb
.. toctree::
:maxdepth: 3
:caption: API
api-construction
api-validation
api-intervalops
api-fileops
api-resources
api-extras
api-vis
api-lowlevel.md
Indices and tables
==================
* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`
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