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#!/usr/bin/env python
# -*- coding: utf-8 -*-
import io
import os
import re
from setuptools import setup, find_packages
PKG_NAME = "bioframe"
README_PATH = "README.md"
INSTALL_DEPS_PATH = "requirements.txt"
CLASSIFIERS = [
"Development Status :: 4 - Beta",
"Operating System :: OS Independent",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
]
def _read(*parts, **kwargs):
filepath = os.path.join(os.path.dirname(__file__), *parts)
encoding = kwargs.pop("encoding", "utf-8")
with io.open(filepath, encoding=encoding) as fh:
text = fh.read()
return text
def get_version(pkg_name):
version = re.search(
r'^__version__\s*=\s*[\'"]([^\'"]*)[\'"]',
_read("{}/_version.py".format(pkg_name)),
re.MULTILINE,
).group(1)
return version
def get_long_description(readme_path):
return _read(readme_path)
def get_requirements(path):
content = _read(path)
return [req for req in content.split("\n") if req != "" and not req.startswith("#")]
# extras_require = {
# 'docs': [
# 'Sphinx>=1.1',
# 'numpydoc>=0.5'
# ]
# }
setup(
name=PKG_NAME,
author="Open2C",
author_email="nezar@mit.edu",
version=get_version(PKG_NAME),
license="MIT",
description="Pandas utilities for tab-delimited and other genomic files",
long_description=get_long_description(README_PATH),
long_description_content_type="text/markdown",
url="https://github.com/open2c/bioframe",
keywords=[
"pandas",
"dataframe",
"genomics",
"epigenomics",
"bioinformatics",
"intervals",
],
packages=find_packages(),
package_data={"bioframe": ["io/data/*"]},
zip_safe=False,
classifiers=CLASSIFIERS,
python_requires=">=3.7",
install_requires=get_requirements(INSTALL_DEPS_PATH),
tests_require=["pytest"],
setup_requires=["wheel"],
# extras_require=extras_require,
# entry_points={
# }
)
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