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cff-version: 1.2.0
type: software
title: bioframe
license: MIT
repository-code: 'https://github.com/open2c/bioframe'
message: >-
If you use this software, please cite it using the
metadata from this file.
authors:
- given-names: Nezar
family-names: Abdennur
orcid: 'https://orcid.org/0000-0001-5814-0864'
- given-names: Geoffrey
family-names: Fudenberg
orcid: "https://orcid.org/0000-0001-5905-6517"
- given-names: Ilya
family-names: Flyamer
orcid: "https://orcid.org/0000-0002-4892-4208"
- given-names: Aleksandra
family-names: Galitsyna
orcid: "https://orcid.org/0000-0001-8969-5694"
- given-names: Anton
family-names: Goloborodko
orcid: "https://orcid.org/0000-0002-2210-8616"
- given-names: Maxim
family-names: Imakaev
orcid: "https://orcid.org/0000-0002-5320-2728"
- given-names: Sergey
family-names: Venev
orcid: "https://orcid.org/0000-0002-1507-7460"
abstract: >-
Bioframe is a library to enable flexible and performant
operations on genomic interval data frames in Python.
keywords:
- bioinformatics
- genomics
- ranges
- intervals
- dataframes
- pandas
- numpy
- Python
identifiers:
- type: doi
value: 10.5281/zenodo.3897573
description: Zenodo
- type: doi
value: 10.1101/2022.02.16.480748
description: bioRxiv preprint
- type: doi
value: 10.1093/bioinformatics/btae088
description: Publication
preferred-citation:
type: article
title: "Bioframe: Operations on Genomic Intervals in Pandas Dataframes"
authors:
- family-names: Open2C
- given-names: Nezar
family-names: Abdennur
orcid: 'https://orcid.org/0000-0001-5814-0864'
- given-names: Geoffrey
family-names: Fudenberg
orcid: "https://orcid.org/0000-0001-5905-6517"
- given-names: Ilya
family-names: Flyamer
name-suffix: M
orcid: "https://orcid.org/0000-0002-4892-4208"
- given-names: Aleksandra
family-names: Galitsyna
name-suffix: A
orcid: "https://orcid.org/0000-0001-8969-5694"
- given-names: Anton
family-names: Goloborodko
orcid: "https://orcid.org/0000-0002-2210-8616"
- given-names: Maxim
family-names: Imakaev
orcid: "https://orcid.org/0000-0002-5320-2728"
- given-names: Sergey
family-names: Venev
orcid: "https://orcid.org/0000-0002-1507-7460"
journal: Bioinformatics
year: 2024
url: "https://doi.org/10.1093/bioinformatics/btae088"
doi: "10.1093/bioinformatics/btae088"
|
