File: _assemblies.yml

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- organism: homo sapiens
  provider: ncbi
  provider_build: GRCh37
  release_year: 2009
  seqinfo: hg19.seqinfo.tsv
  cytobands: hg19.cytoband.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear-revised]
  url: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.25_GRCh37.p13/GRCh37_seqs_for_alignment_pipelines/
- organism: homo sapiens
  provider: ucsc
  provider_build: hg19
  release_year: 2009
  seqinfo: hg19.seqinfo.tsv
  cytobands: hg19.cytoband.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/analysisSet/
- organism: homo sapiens
  provider: ncbi
  provider_build: GRCh38
  release_year: 2013
  seqinfo: hg38.seqinfo.tsv
  cytobands: hg38.cytoband.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.26_GRCh38/GRCh38_major_release_seqs_for_alignment_pipelines/
- organism: homo sapiens
  provider: ucsc
  provider_build: hg38
  release_year: 2013
  seqinfo: hg38.seqinfo.tsv
  cytobands: hg38.cytoband.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/analysisSet/
- organism: homo sapiens
  provider: ncbi
  provider_build: T2T-CHM13v2.0
  release_year: 2022
  seqinfo: hs1.seqinfo.tsv
  cytobands: hs1.cytoband.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/914/755/GCA_009914755.4_T2T-CHM13v2.0/
- organism: homo sapiens
  provider: ucsc
  provider_build: hs1
  release_year: 2022
  seqinfo: hs1.seqinfo.tsv
  cytobands: hs1.cytoband.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://hgdownload.soe.ucsc.edu/goldenPath/hs1/bigZips/
- organism: mus musculus
  provider: ncbi
  provider_build: MGSCv37
  release_year: 2010
  seqinfo: mm9.seqinfo.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/635/GCF_000001635.18_MGSCv37/
- organism: mus musculus
  provider: ucsc
  provider_build: mm9
  release_year: 2007
  seqinfo: mm9.seqinfo.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://hgdownload.soe.ucsc.edu/goldenPath/mm9/bigZips/
- organism: mus musculus
  provider: ncbi
  provider_build: GRCm38
  release_year: 2011
  seqinfo: mm10.seqinfo.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/635/GCF_000001635.20_GRCm38/
- organism: mus musculus
  provider: ucsc
  provider_build: mm10
  release_year: 2011
  seqinfo: mm10.seqinfo.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://hgdownload.soe.ucsc.edu/goldenPath/mm10/bigZips/
- organism: mus musculus
  provider: ncbi
  provider_build: GRCm39
  release_year: 2020
  seqinfo: mm39.seqinfo.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/635/GCF_000001635.27_GRCm39/
- organism: mus musculus
  provider: ucsc
  provider_build: mm39
  release_year: 2020
  seqinfo: mm39.seqinfo.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://hgdownload.soe.ucsc.edu/goldenPath/mm39/bigZips/
- organism: drosophila melanogaster
  provider: ucsc
  provider_build: dm3
  release_year: 2006
  seqinfo: dm3.seqinfo.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://hgdownload.soe.ucsc.edu/goldenPath/dm3/bigZips/
- organism: drosophila melanogaster
  provider: ucsc
  provider_build: dm6
  release_year: 2014
  seqinfo: dm6.seqinfo.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://hgdownload.soe.ucsc.edu/goldenPath/dm6/bigZips/
- organism: caenorhabditis elegans
  provider: ucsc
  provider_build: ce10
  release_year: 2010
  seqinfo: ce10.seqinfo.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://hgdownload.soe.ucsc.edu/goldenPath/ce10/bigZips/
- organism: caenorhabditis elegans
  provider: ucsc
  provider_build: ce11
  release_year: 2013
  seqinfo: ce11.seqinfo.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://hgdownload.soe.ucsc.edu/goldenPath/ce11/bigZips/
- organism: danio rerio
  provider: ucsc
  provider_build: danRer10
  release_year: 2014
  seqinfo: danRer10.seqinfo.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://hgdownload.soe.ucsc.edu/goldenPath/danRer10/bigZips/
- organism: danio rerio
  provider: ucsc
  provider_build: danRer11
  release_year: 2017
  seqinfo: danRer10.seqinfo.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://hgdownload.soe.ucsc.edu/goldenPath/danRer11/bigZips/
- organism: saccharomyces cerevisiae
  provider: ucsc
  provider_build: sacCer3
  release_year: 2011
  seqinfo: sacCer3.seqinfo.tsv
  default_roles: [assembled]
  default_units: [primary, non-nuclear]
  url: https://hgdownload.soe.ucsc.edu/goldenPath/sacCer3/bigZips/