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#!/usr/bin/env python
# ----------------------------------------------------------------------------
# Copyright (c) 2011-2020, The BIOM Format Development Team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# ----------------------------------------------------------------------------
from setuptools import setup
from setuptools.extension import Extension
long_description = """BIOM: Biological Observation Matrix
http://www.biom-format.org
The Biological Observation Matrix (BIOM) format or: how I learned to stop
worrying and love the ome-ome
Daniel McDonald, Jose C Clemente, Justin Kuczynski, Jai Ram Rideout,
Jesse Stombaugh, Doug Wendel, Andreas Wilke, Susan Huse, John Hufnagle,
Folker Meyer, Rob Knight, J Gregory Caporaso
GigaScience 2012, 1:7.
"""
def get_extensions():
import numpy as np
from Cython.Build import cythonize
extensions = [
Extension("biom._filter",
["biom/_filter.pyx"],
include_dirs=[np.get_include()]),
Extension("biom._transform",
["biom/_transform.pyx"],
include_dirs=[np.get_include()]),
Extension("biom._subsample",
["biom/_subsample.pyx"],
include_dirs=[np.get_include()]),
]
return cythonize(extensions, force=True)
setup(ext_modules=get_extensions())
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