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python-biopython 1.42-2
- links: PTS
- area: main
- in suites: etch, etch-m68k
- size: 17,584 kB
- ctags: 12,272
- sloc: python: 80,461; xml: 13,834; ansic: 7,902; cpp: 1,855; sql: 1,144; makefile: 203
Folder: Bio
| .. (parent) | ||||
| d | rwxr-xr-x | 76 | Affy | |
| d | rwxr-xr-x | 32 | Ais | |
| d | rwxr-xr-x | 103 | Align | |
| d | rwxr-xr-x | 4,096 | AlignAce | |
| d | rwxr-xr-x | 72 | Alphabet | |
| d | rwxr-xr-x | 32 | Application | |
| d | rwxr-xr-x | 4,096 | Blast | |
| d | rwxr-xr-x | 32 | CAPS | |
| d | rwxr-xr-x | 76 | CDD | |
| d | rwxr-xr-x | 60 | Clustalw | |
| d | rwxr-xr-x | 4,096 | Cluster | |
| d | rwxr-xr-x | 32 | Compass | |
| d | rwxr-xr-x | 32 | Crystal | |
| d | rwxr-xr-x | 79 | Data | |
| d | rwxr-xr-x | 78 | ECell | |
| d | rwxr-xr-x | 4,096 | EUtils | |
| d | rwxr-xr-x | 139 | Emboss | |
| d | rwxr-xr-x | 59 | Encodings | |
| d | rwxr-xr-x | 32 | Enzyme | |
| d | rwxr-xr-x | 77 | FSSP | |
| d | rwxr-xr-x | 56 | Fasta | |
| d | rwxr-xr-x | 151 | GA | |
| d | rwxr-xr-x | 97 | GFF | |
| d | rwxr-xr-x | 99 | GenBank | |
| d | rwxr-xr-x | 76 | Geo | |
| d | rwxr-xr-x | 32 | Gobase | |
| d | rwxr-xr-x | 147 | Graphics | |
| d | rwxr-xr-x | 133 | HMM | |
| d | rwxr-xr-x | 88 | IntelliGenetics | |
| d | rwxr-xr-x | 32 | InterPro | |
| d | rwxr-xr-x | 4,096 | KDTree | |
| d | rwxr-xr-x | 82 | KEGG | |
| d | rwxr-xr-x | 78 | Kabat | |
| d | rwxr-xr-x | 81 | LocusLink | |
| d | rwxr-xr-x | 71 | MEME | |
| d | rwxr-xr-x | 4,096 | Medline | |
| d | rwxr-xr-x | 100 | MetaTool | |
| d | rwxr-xr-x | 4,096 | Mindy | |
| d | rwxr-xr-x | 92 | MultiProc | |
| d | rwxr-xr-x | 97 | NBRF | |
| d | rwxr-xr-x | 76 | NMR | |
| d | rwxr-xr-x | 32 | Ndb | |
| d | rwxr-xr-x | 121 | NeuralNetwork | |
| d | rwxr-xr-x | 108 | Nexus | |
| d | rwxr-xr-x | 4,096 | PDB | |
| d | rwxr-xr-x | 51 | Parsers | |
| d | rwxr-xr-x | 46 | Pathway | |
| d | rwxr-xr-x | 73 | Prosite | |
| d | rwxr-xr-x | 32 | Rebase | |
| d | rwxr-xr-x | 4,096 | Restriction | |
| d | rwxr-xr-x | 4,096 | SCOP | |
| d | rwxr-xr-x | 61 | SVDSuperimposer | |
| d | rwxr-xr-x | 76 | Saf | |
| d | rwxr-xr-x | 72 | SeqIO | |
| d | rwxr-xr-x | 4,096 | SeqUtils | |
| d | rwxr-xr-x | 66 | Sequencing | |
| d | rwxr-xr-x | 52 | Statistics | |
| d | rwxr-xr-x | 79 | SubsMat | |
| d | rwxr-xr-x | 73 | SwissProt | |
| d | rwxr-xr-x | 32 | UniGene | |
| d | rwxr-xr-x | 110 | WWW | |
| d | rwxr-xr-x | 67 | Wise | |
| d | rwxr-xr-x | 69 | builders | |
| d | rwxr-xr-x | 4,096 | config | |
| d | rwxr-xr-x | 4,096 | dbdefs | |
| d | rwxr-xr-x | 4,096 | expressions | |
| d | rwxr-xr-x | 136 | formatdefs | |
| d | rwxr-xr-x | 52 | writers | |
| - | rw-r--r-- | 9,448 | DBXRef.py | |
| - | rw-r--r-- | 11,743 | Decode.py | |
| - | rwxr-xr-x | 6,414 | DocSQL.py | |
| - | rw-r--r-- | 1,855 | EZRetrieve.py | |
| - | rw-r--r-- | 4,645 | File.py | |
| - | rw-r--r-- | 4,771 | FilteredReader.py | |
| - | rw-r--r-- | 5,710 | FormatIO.py | |
| - | rw-r--r-- | 2,650 | HotRand.py | |
| - | rw-r--r-- | 4,947 | Index.py | |
| - | rw-r--r-- | 4,334 | LogisticRegression.py | |
| - | rw-r--r-- | 22,002 | MarkovModel.py | |
| - | rw-r--r-- | 3,255 | MarkupEditor.py | |
| - | rw-r--r-- | 9,062 | MaxEntropy.py | |
| - | rw-r--r-- | 7,670 | NaiveBayes.py | |
| - | rw-r--r-- | 6,710 | NetCatch.py | |
| - | rw-r--r-- | 15,445 | ParserSupport.py | |
| - | rw-r--r-- | 2,633 | PropertyManager.py | |
| - | rw-r--r-- | 12,649 | PubMed.py | |
| - | rw-r--r-- | 4,278 | SGMLExtractor.py | |
| - | rw-r--r-- | 5,688 | Search.py | |
| - | rw-r--r-- | 13,063 | Seq.py | |
| - | rw-r--r-- | 15,342 | SeqFeature.py | |
| - | rw-r--r-- | 1,044 | SeqRecord.py | |
| - | rw-r--r-- | 16,412 | Std.py | |
| - | rw-r--r-- | 26,355 | StdHandler.py | |
| - | rw-r--r-- | 1,051 | Transcribe.py | |
| - | rw-r--r-- | 4,122 | Translate.py | |
| - | rw-r--r-- | 200 | Writer.py | |
| - | rw-r--r-- | 2,103 | __init__.py | |
| - | rwxr-xr-x | 9,944 | biblio.py | |
| - | rw-r--r-- | 1,343 | cMarkovModelmodule.c | |
| - | rw-r--r-- | 2,169 | cdistancemodule.c | |
| - | rw-r--r-- | 4,043 | clistfnsmodule.c | |
| - | rw-r--r-- | 3,332 | cmathfnsmodule.c | |
| - | rw-r--r-- | 16,904 | cpairwise2module.c | |
| - | rw-r--r-- | 641 | crc.py | |
| - | rw-r--r-- | 3,143 | cstringfnsmodule.c | |
| - | rw-r--r-- | 695 | csupport.c | |
| - | rw-r--r-- | 45 | csupport.h | |
| - | rw-r--r-- | 1,251 | distance.py | |
| - | rw-r--r-- | 3,566 | kNN.py | |
| - | rw-r--r-- | 4,762 | lcc.py | |
| - | rw-r--r-- | 4,104 | listfns.py | |
| - | rw-r--r-- | 2,452 | mathfns.py | |
| - | rw-r--r-- | 33,620 | pairwise2.py | |
| - | rw-r--r-- | 3,038 | stringfns.py | |
| - | rw-r--r-- | 21,441 | trie.c | |
| - | rw-r--r-- | 3,735 | trie.h | |
| - | rw-r--r-- | 2,714 | triefind.py | |
| - | rw-r--r-- | 15,970 | triemodule.c | |
| - | rw-r--r-- | 3,483 | utils.py |
