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python-biopython 1.42-2
  • links: PTS
  • area: main
  • in suites: etch, etch-m68k
  • size: 17,584 kB
  • ctags: 12,272
  • sloc: python: 80,461; xml: 13,834; ansic: 7,902; cpp: 1,855; sql: 1,144; makefile: 203

Folder: Bio

d .. (parent)
d d rwxr-xr-x 76 Affy
d d rwxr-xr-x 32 Ais
d d rwxr-xr-x 103 Align
d d rwxr-xr-x 4,096 AlignAce
d d rwxr-xr-x 72 Alphabet
d d rwxr-xr-x 32 Application
d d rwxr-xr-x 4,096 Blast
d d rwxr-xr-x 32 CAPS
d d rwxr-xr-x 76 CDD
d d rwxr-xr-x 60 Clustalw
d d rwxr-xr-x 4,096 Cluster
d d rwxr-xr-x 32 Compass
d d rwxr-xr-x 32 Crystal
d d rwxr-xr-x 79 Data
d d rwxr-xr-x 78 ECell
d d rwxr-xr-x 4,096 EUtils
d d rwxr-xr-x 139 Emboss
d d rwxr-xr-x 59 Encodings
d d rwxr-xr-x 32 Enzyme
d d rwxr-xr-x 77 FSSP
d d rwxr-xr-x 56 Fasta
d d rwxr-xr-x 151 GA
d d rwxr-xr-x 97 GFF
d d rwxr-xr-x 99 GenBank
d d rwxr-xr-x 76 Geo
d d rwxr-xr-x 32 Gobase
d d rwxr-xr-x 147 Graphics
d d rwxr-xr-x 133 HMM
d d rwxr-xr-x 88 IntelliGenetics
d d rwxr-xr-x 32 InterPro
d d rwxr-xr-x 4,096 KDTree
d d rwxr-xr-x 82 KEGG
d d rwxr-xr-x 78 Kabat
d d rwxr-xr-x 81 LocusLink
d d rwxr-xr-x 71 MEME
d d rwxr-xr-x 4,096 Medline
d d rwxr-xr-x 100 MetaTool
d d rwxr-xr-x 4,096 Mindy
d d rwxr-xr-x 92 MultiProc
d d rwxr-xr-x 97 NBRF
d d rwxr-xr-x 76 NMR
d d rwxr-xr-x 32 Ndb
d d rwxr-xr-x 121 NeuralNetwork
d d rwxr-xr-x 108 Nexus
d d rwxr-xr-x 4,096 PDB
d d rwxr-xr-x 51 Parsers
d d rwxr-xr-x 46 Pathway
d d rwxr-xr-x 73 Prosite
d d rwxr-xr-x 32 Rebase
d d rwxr-xr-x 4,096 Restriction
d d rwxr-xr-x 4,096 SCOP
d d rwxr-xr-x 61 SVDSuperimposer
d d rwxr-xr-x 76 Saf
d d rwxr-xr-x 72 SeqIO
d d rwxr-xr-x 4,096 SeqUtils
d d rwxr-xr-x 66 Sequencing
d d rwxr-xr-x 52 Statistics
d d rwxr-xr-x 79 SubsMat
d d rwxr-xr-x 73 SwissProt
d d rwxr-xr-x 32 UniGene
d d rwxr-xr-x 110 WWW
d d rwxr-xr-x 67 Wise
d d rwxr-xr-x 69 builders
d d rwxr-xr-x 4,096 config
d d rwxr-xr-x 4,096 dbdefs
d d rwxr-xr-x 4,096 expressions
d d rwxr-xr-x 136 formatdefs
d d rwxr-xr-x 52 writers
- - rw-r--r-- 9,448 DBXRef.py
- - rw-r--r-- 11,743 Decode.py
- - rwxr-xr-x 6,414 DocSQL.py
- - rw-r--r-- 1,855 EZRetrieve.py
- - rw-r--r-- 4,645 File.py
- - rw-r--r-- 4,771 FilteredReader.py
- - rw-r--r-- 5,710 FormatIO.py
- - rw-r--r-- 2,650 HotRand.py
- - rw-r--r-- 4,947 Index.py
- - rw-r--r-- 4,334 LogisticRegression.py
- - rw-r--r-- 22,002 MarkovModel.py
- - rw-r--r-- 3,255 MarkupEditor.py
- - rw-r--r-- 9,062 MaxEntropy.py
- - rw-r--r-- 7,670 NaiveBayes.py
- - rw-r--r-- 6,710 NetCatch.py
- - rw-r--r-- 15,445 ParserSupport.py
- - rw-r--r-- 2,633 PropertyManager.py
- - rw-r--r-- 12,649 PubMed.py
- - rw-r--r-- 4,278 SGMLExtractor.py
- - rw-r--r-- 5,688 Search.py
- - rw-r--r-- 13,063 Seq.py
- - rw-r--r-- 15,342 SeqFeature.py
- - rw-r--r-- 1,044 SeqRecord.py
- - rw-r--r-- 16,412 Std.py
- - rw-r--r-- 26,355 StdHandler.py
- - rw-r--r-- 1,051 Transcribe.py
- - rw-r--r-- 4,122 Translate.py
- - rw-r--r-- 200 Writer.py
- - rw-r--r-- 2,103 __init__.py
- - rwxr-xr-x 9,944 biblio.py
- - rw-r--r-- 1,343 cMarkovModelmodule.c
- - rw-r--r-- 2,169 cdistancemodule.c
- - rw-r--r-- 4,043 clistfnsmodule.c
- - rw-r--r-- 3,332 cmathfnsmodule.c
- - rw-r--r-- 16,904 cpairwise2module.c
- - rw-r--r-- 641 crc.py
- - rw-r--r-- 3,143 cstringfnsmodule.c
- - rw-r--r-- 695 csupport.c
- - rw-r--r-- 45 csupport.h
- - rw-r--r-- 1,251 distance.py
- - rw-r--r-- 3,566 kNN.py
- - rw-r--r-- 4,762 lcc.py
- - rw-r--r-- 4,104 listfns.py
- - rw-r--r-- 2,452 mathfns.py
- - rw-r--r-- 33,620 pairwise2.py
- - rw-r--r-- 3,038 stringfns.py
- - rw-r--r-- 21,441 trie.c
- - rw-r--r-- 3,735 trie.h
- - rw-r--r-- 2,714 triefind.py
- - rw-r--r-- 15,970 triemodule.c
- - rw-r--r-- 3,483 utils.py