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<HTML>
<HEAD>
<TITLE>BLAST Search Results </TITLE>
</HEAD>
<BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
<A HREF="http://www.ncbi.nlm.nih.gov/BLAST/blast_form.map"> <IMG SRC="http://www.ncbi.nlm.nih.gov/BLAST/blast_results.gif" BORDER=0 ISMAP></A>
<BR><BR><PRE>
<b>TBLASTN 2.0.10 [Aug-26-1999]</b>
<b><a href="http://www.ncbi.nlm.nih.gov/htbin-
post/Entrez/query?uid=9254694&form=6&db=m&Dopt=r">Reference</a>:</b>
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
<p>
<b>Query=</b> gi|729325|sp|P39483|DHG2_BACME GLUCOSE 1-DEHYDROGENASE
II (GLCDH-II).
(261 letters)
<b>Database:</b> Non-redundant Database of GenBank STS Division
89,405 sequences; 32,867,852 total letters
<p> <p>If you have any problems or questions with the results of this search <br>please refer to the <b><a href=http://www.ncbi.nlm.nih.gov/BLAST/blast_FAQs.html>BLAST FAQs</a></b><br><p>
<FORM NAME="BLASTFORM">
</PRE>
<CENTER>
<H3><a href="/BLAST/newoptions.html#graphical-overview"> Distribution of 7 Blast Hits on the Query Sequence</a></H3>
<input name=defline size=80 value="Mouse-over to show defline and scores. Click to show alignments">
</CENTER>
<map name=img_map>
<area shape=rect coords=255,101,379,106 href="#3820341" ONMOUSEOVER='document.BLASTFORM.defline.value="AJ229891 Kluyveromyces lactis DNA fragment for sequence tagged ..S=46.9 E=1e-05"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=376,108,502,113 href="#1375419" ONMOUSEOVER='document.BLASTFORM.defline.value="G27169 human STS SHGC-31983...S=43.4 E=1e-04"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=416,101,500,106 href="#3819804" ONMOUSEOVER='document.BLASTFORM.defline.value="AJ230012 Kluyveromyces lactis DNA fragment for sequence tagged ..S=39.5 E=0.002"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=441,115,504,120 href="#1375215" ONMOUSEOVER='document.BLASTFORM.defline.value="G26965 human STS SHGC-31083...S=30.9 E=0.76"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=79,101,137,106 href="#177714" ONMOUSEOVER='document.BLASTFORM.defline.value="L09988 Human Chromosome 4 (clone p4-1095) STS4-889...S=29.3 E=2.2"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=315,115,409,120 href="#5714409" ONMOUSEOVER='document.BLASTFORM.defline.value="AF106665 Mus musculus chromosome 6 clone D6wum9 map between Nkrp1..S=29.3 E=2.2"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=238,108,304,113 href="#1341648" ONMOUSEOVER='document.BLASTFORM.defline.value="G21322 human STS WI-12250...S=28.6 E=3.8"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
</map>
<CENTER>
<IMG WIDTH=529 HEIGHT=122 USEMAP=#img_map BORDER=1 SRC="nph-getgif.cgi?miles&20789170534635.gif" ISMAP></CENTER>
<HR>
<PRE>
<PRE>
Score E
Sequences producing significant alignments: (bits) Value
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=03820341&dopt=GenBank">emb|AJ229891|KLAJ9891</a> Kluyveromyces lactis DNA fragment for... <a href = #3820341> 47</a> 1e-05
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=01375419&dopt=GenBank">gb|G27169|G27169</a> human STS SHGC-31983. <a href = #1375419> 43</a> 1e-04
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=03819804&dopt=GenBank">emb|AJ230012|KLAJ0012</a> Kluyveromyces lactis DNA fragment for... <a href = #3819804> 39</a> 0.002
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=01375215&dopt=GenBank">gb|G26965|G26965</a> human STS SHGC-31083. <a href = #1375215> 31</a> 0.76
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=05714409&dopt=GenBank">gb|AF106665.1|AF106665</a> Mus musculus chromosome 6 clone D6wu... <a href = #5714409> 29</a> 2.2
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=00177714&dopt=GenBank">gb|L09988|HUM4STS889</a> Human Chromosome 4 (clone p4-1095) STS... <a href = #177714> 29</a> 2.2
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=01341648&dopt=GenBank">gb|G21322|G21322</a> human STS WI-12250. <a href = #1341648> 29</a> 3.8
<PRE>
<a name = 3820341> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=03820341&dopt=GenBank">emb|AJ229891|KLAJ9891</a> Kluyveromyces lactis DNA fragment for sequence tagged site, clone
okam5d07r [Kluyveromyces lactis]
Length = 230
Score = 46.9 bits (109), Expect = 1e-05
Identities = 25/72 (34%), Positives = 44/72 (60%), Gaps = 3/72 (4%)
Frame = +1
Query: 108 NWNQVIDTNLTGAFLGSREAIKYFVEN---DIKGNVINMSSVHEMIPWPLFVHYAASKGG 164
+W QVIDTN+ G F + A+ + D + V+N+S+V+ ++ P Y A+K
Sbjct: 1 SWRQVIDTNINGTFYTLKYALPLMESSSSPDSEAAVVNLSAVNGLVGIPGISPYTATKHA 180
Query: 165 MKLMTETLALEYAPK 179
+ +T+++ALEYA +
Sbjct: 181 VIGITQSVALEYAER 225
</PRE>
<PRE>
<a name = 1375419> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=01375419&dopt=GenBank">gb|G27169|G27169</a> human STS SHGC-31983.
Length = 594
Score = 43.4 bits (100), Expect = 1e-04
Identities = 21/73 (28%), Positives = 34/73 (45%)
Frame = -1
Query: 177 APKGIRVNNIGPGAIDTPINAEKFADPEQRADVESMIPMGYIGKPEEIASVAAFLASSQA 236
AP RVN + P + T + + DP + + + P+G + E + FL S ++
Sbjct: 312 APXRXRVNAVXPXVVMTSMGQATWXDPXKAXTMLNRXPLGXFAEVEHVVKAILFLLSDRS 133
Query: 237 SYVTGITLFADGG 249
TG TL +GG
Sbjct: 132 GMTTGSTLPVEGG 94
</PRE>
<PRE>
<a name = 3819804> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=03819804&dopt=GenBank">emb|AJ230012|KLAJ0012</a> Kluyveromyces lactis DNA fragment for sequence tagged site, clone
okam6d01d [Kluyveromyces lactis]
Length = 199
Score = 39.5 bits (90), Expect = 0.002
Identities = 18/49 (36%), Positives = 26/49 (52%)
Frame = -1
Query: 200 FADPEQRADVESMIPMGYIGKPEEIASVAAFLASSQASYVTGITLFADG 248
F D + + S+IPMG G P+E+ + AS ++Y TG L DG
Sbjct: 157 FVDEDLKNKWHSLIPMGREGLPQELVGAYLYFASDASTYTTGSDLLVDG 11
</PRE>
<PRE>
<a name = 1375215> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=01375215&dopt=GenBank">gb|G26965|G26965</a> human STS SHGC-31083.
Length = 268
Score = 30.9 bits (68), Expect = 0.76
Identities = 12/37 (32%), Positives = 19/37 (50%)
Frame = -1
Query: 214 PMGYIGKPEEIASVAAFLASSQASYVTGITLFADGGM 250
PMG G PE++ V A + +TG ++ GG+
Sbjct: 268 PMGXXGDPEDVXDVXAXXXXEXSGXITGTSVEVTGGL 158
</PRE>
<PRE>
<a name = 5714409> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=05714409&dopt=GenBank">gb|AF106665.1|AF106665</a> Mus musculus chromosome 6 clone D6wum9 map between Nkrp1 and Prp
strain C57BL/6J, sequence tagged site
Length = 299
Score = 29.3 bits (64), Expect = 2.2
Identities = 17/55 (30%), Positives = 32/55 (57%), Gaps = 2/55 (3%)
Frame = -2
Query: 142 NMSSVHEMIPWPLFVHYAASKGGMKLMTETL--ALEYAPKGIRVNNIGPGAIDTPIN 196
++S +I +P F+ S G L+ +L A+ + P GI V+++GP ++ T +N
Sbjct: 172 SLSPTQYLIMFPSFLPCPLSHPGPFLLPSSLVIAVFFLPNGIEVSSLGPFSLRTLLN 2
</PRE>
<PRE>
<a name = 177714> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=00177714&dopt=GenBank">gb|L09988|HUM4STS889</a> Human Chromosome 4 (clone p4-1095) STS4-889.
Length = 412
Score = 29.3 bits (64), Expect = 2.2
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1
Query: 7 DKVVVVTGGSKGLGRAMAVRFGQEQSKVVVNYRS 40
DKV V GGS+G+GRA+A ++ ++ V R+
Sbjct: 316 DKVCAVFGGSRGIGRAVAQLMARKGYRLAVIARN 215
</PRE>
<PRE>
<a name = 1341648> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=01341648&dopt=GenBank">gb|G21322|G21322</a> human STS WI-12250.
Length = 586
Score = 28.6 bits (62), Expect = 3.8
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 98 PVPSHELSLENWNQ-VIDTNLTGAFLGSREAIKYFVENDI 136
PVP ELS +W+Q + T+ T F S YF N I
Sbjct: 220 PVPMQELSKVHWSQFFLTTSPTMTFFFSHYLANYFFRNSI 339
</PRE>
<PRE>
Database: Non-redundant Database of GenBank STS Division
Posted date: Dec 18, 1999 7:45 PM
Number of letters in database: 32,867,852
Number of sequences in database: 89,405
Lambda K H
0.315 0.134 0.378
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6334151
Number of Sequences: 89405
Number of extensions: 57201
Number of successful extensions: 152
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 7
length of query: 261
length of database: 10,955,950
effective HSP length: 50
effective length of query: 211
effective length of database: 6,485,700
effective search space: 1368482700
effective search space used: 1368482700
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 59 (27.4 bits)
</PRE>
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