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<HTML>
<HEAD>
<TITLE>BLAST Search Results </TITLE>
</HEAD>
<BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
<A HREF="http://www.ncbi.nlm.nih.gov/BLAST/blast_form.map"> <IMG SRC="http://www.ncbi.nlm.nih.gov/BLAST/blast_results.gif" BORDER=0 ISMAP></A>
<BR><BR><PRE>
<b>BLASTX 2.0.10 [Aug-26-1999]</b>
<b><a href="http://www.ncbi.nlm.nih.gov/htbin-
post/Entrez/query?uid=9254694&form=6&db=m&Dopt=r">Reference</a>:</b>
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
<p>
<b>Query=</b> gi|1593528|gb|G29977.1|G29977 human STS SHGC-35896.
(608 letters)
<b>Database:</b> Non-redundant SwissProt sequences
82,258 sequences; 29,652,561 total letters
<p> <p>If you have any problems or questions with the results of this search <br>please refer to the <b><a href=http://www.ncbi.nlm.nih.gov/BLAST/blast_FAQs.html>BLAST FAQs</a></b><br><p>
<FORM NAME="BLASTFORM">
</PRE>
<CENTER>
<H3><a href="/BLAST/newoptions.html#graphical-overview"> Distribution of 12 Blast Hits on the Query Sequence</a></H3>
<input name=defline size=80 value="Mouse-over to show defline and scores. Click to show alignments">
</CENTER>
<map name=img_map>
<area shape=rect coords=413,53,507,58 href="#461675" ONMOUSEOVER='document.BLASTFORM.defline.value="P29400 COLLAGEN ALPHA 5(IV) CHAIN PRECURSOR..S=31.3 E=1.6"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=413,60,507,65 href="#728997" ONMOUSEOVER='document.BLASTFORM.defline.value="Q07092 COLLAGEN ALPHA 1(XVI) CHAIN PRECURSOR..S=30.5 E=2.8"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=429,67,520,72 href="#115405" ONMOUSEOVER='document.BLASTFORM.defline.value="P20630 CUTICLE COLLAGEN 12 PRECURSOR..S=30.5 E=2.8"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=429,74,520,79 href="#115406" ONMOUSEOVER='document.BLASTFORM.defline.value="P20631 CUTICLE COLLAGEN 13 PRECURSOR..S=30.5 E=2.8"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=440,81,500,86 href="#2493777" ONMOUSEOVER='document.BLASTFORM.defline.value="Q09455 PUTATIVE CUTICLE COLLAGEN C09G5.4..S=30.5 E=2.8"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=440,88,507,93 href="#465855" ONMOUSEOVER='document.BLASTFORM.defline.value="P34391 PUTATIVE CUTICLE COLLAGEN F09G8.6..S=30.1 E=3.7"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=413,95,520,100 href="#584868" ONMOUSEOVER='document.BLASTFORM.defline.value="P17140 COLLAGEN ALPHA 2(IV) CHAIN PRECURSOR..S=29.7 E=4.8"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=440,102,507,107 href="#728999" ONMOUSEOVER='document.BLASTFORM.defline.value="P39061 COLLAGEN ALPHA 1(XVIII) CHAIN PRECURSOR [CONTAINS: ENDOSTA..S=29.3 E=6.3"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=413,109,520,114 href="#543912" ONMOUSEOVER='document.BLASTFORM.defline.value="P13941 COLLAGEN ALPHA 1(III) CHAIN..S=29.0 E=8.3"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=413,116,495,121 href="#1345650" ONMOUSEOVER='document.BLASTFORM.defline.value="Q02388 COLLAGEN ALPHA 1(VII) CHAIN PRECURSOR (LONG-CHAIN COLLAGEN..S=29.0 E=8.3"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=435,123,507,128 href="#115306" ONMOUSEOVER='document.BLASTFORM.defline.value="P02461 COLLAGEN ALPHA 1(III) CHAIN PRECURSOR..S=29.0 E=8.3"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
</map>
<CENTER>
<IMG WIDTH=535 HEIGHT=130 USEMAP=#img_map BORDER=1 SRC="nph-getgif.cgi?iblast0&20789170532578.gif" ISMAP></CENTER>
<HR>
<PRE>
<PRE>
Score E
Sequences producing significant alignments: (bits) Value
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00461675&dopt=GenPept">sp|P29400|CA54_HUMAN</a> COLLAGEN ALPHA 5(IV) CHAIN PRECURSOR <a href = #461675> 31</a> 1.6
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02493777&dopt=GenPept">sp|Q09455|YQ34_CAEEL</a> PUTATIVE CUTICLE COLLAGEN C09G5.4 <a href = #2493777> 31</a> 2.8
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00728997&dopt=GenPept">sp|Q07092|CA1F_HUMAN</a> COLLAGEN ALPHA 1(XVI) CHAIN PRECURSOR <a href = #728997> 31</a> 2.8
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00115406&dopt=GenPept">sp|P20631|CC13_CAEEL</a> CUTICLE COLLAGEN 13 PRECURSOR <a href = #115406> 31</a> 2.8
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00115405&dopt=GenPept">sp|P20630|CC12_CAEEL</a> CUTICLE COLLAGEN 12 PRECURSOR <a href = #115405> 31</a> 2.8
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00465855&dopt=GenPept">sp|P34391|YLS6_CAEEL</a> PUTATIVE CUTICLE COLLAGEN F09G8.6 <a href = #465855> 30</a> 3.7
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00584868&dopt=GenPept">sp|P17140|CA24_CAEEL</a> COLLAGEN ALPHA 2(IV) CHAIN PRECURSOR <a href = #584868> 30</a> 4.8
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00728999&dopt=GenPept">sp|P39061|CA1H_MOUSE</a> COLLAGEN ALPHA 1(XVIII) CHAIN PRECURSO... <a href = #728999> 29</a> 6.3
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=01345650&dopt=GenPept">sp|Q02388|CA17_HUMAN</a> COLLAGEN ALPHA 1(VII) CHAIN PRECURSOR ... <a href = #1345650> 29</a> 8.3
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00543912&dopt=GenPept">sp|P13941|CA13_RAT</a> COLLAGEN ALPHA 1(III) CHAIN <a href = #543912> 29</a> 8.3
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00115306&dopt=GenPept">sp|P02461|CA13_HUMAN</a> COLLAGEN ALPHA 1(III) CHAIN PRECURSOR <a href = #115306> 29</a> 8.3
<PRE>
<a name = 461675> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00461675&dopt=GenPept">sp|P29400|CA54_HUMAN</a> COLLAGEN ALPHA 5(IV) CHAIN PRECURSOR
Length = 1685
Score = 31.3 bits (69), Expect = 1.6
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1
Query: 460 PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
P + + K G P IPG+ G PQG G G P GP
Sbjct: 1364 PSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPG-PTGP 1404
</PRE>
<PRE>
<a name = 2493777> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02493777&dopt=GenPept">sp|Q09455|YQ34_CAEEL</a> PUTATIVE CUTICLE COLLAGEN C09G5.4
Length = 323
Score = 30.5 bits (67), Expect = 2.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 496 GRPXIPGKGGXNXXGXPQGKXGXXGAP 576
G+P PG+GG P+G G GAP
Sbjct: 156 GQPGHPGQGGSQGPAGPRGPAGDAGAP 182
</PRE>
<PRE>
<a name = 728997> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00728997&dopt=GenPept">sp|Q07092|CA1F_HUMAN</a> COLLAGEN ALPHA 1(XVI) CHAIN PRECURSOR
Length = 1603
Score = 30.5 bits (67), Expect = 2.8
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +1
Query: 460 PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
P KGE GRP PG+ G P G G G P P
Sbjct: 743 PGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPP 784
</PRE>
<PRE>
<a name = 115406> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00115406&dopt=GenPept">sp|P20631|CC13_CAEEL</a> CUTICLE COLLAGEN 13 PRECURSOR
Length = 316
Score = 30.5 bits (67), Expect = 2.8
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +1
Query: 481 SKXSXGRPXIPGKGGXNXXGXP--QGKXGXXGAPXGPXXXXXP 603
S G P PG+ G + G P QG G GAP P P
Sbjct: 250 SPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAPGAPGQAGAP 292
</PRE>
<PRE>
<a name = 115405> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00115405&dopt=GenPept">sp|P20630|CC12_CAEEL</a> CUTICLE COLLAGEN 12 PRECURSOR
Length = 316
Score = 30.5 bits (67), Expect = 2.8
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +1
Query: 481 SKXSXGRPXIPGKGGXNXXGXP--QGKXGXXGAPXGPXXXXXP 603
S G P PG+ G + G P QG G GAP P P
Sbjct: 250 SPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAPGAPGQAGAP 292
</PRE>
<PRE>
<a name = 465855> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00465855&dopt=GenPept">sp|P34391|YLS6_CAEEL</a> PUTATIVE CUTICLE COLLAGEN F09G8.6
Length = 278
Score = 30.1 bits (66), Expect = 3.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 496 GRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
G+P G+GG P+G G GAP P
Sbjct: 155 GQPGADGQGGAPGPAGPEGPAGDAGAPGAP 184
</PRE>
<PRE>
<a name = 584868> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00584868&dopt=GenPept">sp|P17140|CA24_CAEEL</a> COLLAGEN ALPHA 2(IV) CHAIN PRECURSOR
Length = 1758
Score = 29.7 bits (65), Expect = 4.8
Identities = 19/48 (39%), Positives = 21/48 (43%)
Frame = +1
Query: 460 PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGPXXXXXP 603
P KGE G+P PG+ G G P GK G GAP P P
Sbjct: 1059 PGFKGETGLPGYGQPGQPGEKG--LPGIP-GKAGRQGAPGSPGQDGLP 1103
</PRE>
<PRE>
Score = 29.7 bits (65), Expect = 4.8
Identities = 18/42 (42%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Frame = +1
Query: 460 PQNKGEVSKXSXGRPXIPG-KGGXNXXGXPQGKXGXXGAPXGP 585
P NKGE G+P PG KG G P G G G P P
Sbjct: 675 PGNKGEAGYGQPGQPGFPGAKGDGGLPGLP-GTPGLQGMPGEP 716
</PRE>
<PRE>
<a name = 728999> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00728999&dopt=GenPept">sp|P39061|CA1H_MOUSE</a> COLLAGEN ALPHA 1(XVIII) CHAIN PRECURSOR [CONTAINS: ENDOSTATIN]
Length = 1315
Score = 29.3 bits (64), Expect = 6.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 496 GRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
GRP +PG+ G P+G G G P P
Sbjct: 842 GRPGLPGQQGVQGPSGPKGDKGEVGPPGPP 871
</PRE>
<PRE>
<a name = 1345650> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=01345650&dopt=GenPept">sp|Q02388|CA17_HUMAN</a> COLLAGEN ALPHA 1(VII) CHAIN PRECURSOR (LONG-CHAIN COLLAGEN) (LC
COLLAGEN)
Length = 2944
Score = 29.0 bits (63), Expect = 8.3
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 460 PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXG 570
P KGE G P +PG+ G P+G G G
Sbjct: 1441 PGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIG 1477
</PRE>
<PRE>
<a name = 543912> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00543912&dopt=GenPept">sp|P13941|CA13_RAT</a> COLLAGEN ALPHA 1(III) CHAIN
Length = 636
Score = 29.0 bits (63), Expect = 8.3
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = +1
Query: 460 PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGPXXXXXP 603
P KGE P PG G PQG G G+P GP P
Sbjct: 2 PGEKGEGGPPGAAGP--PGGSGPAGPPGPQGVKGERGSPGGPGAAGFP 47
</PRE>
<PRE>
<a name = 115306> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00115306&dopt=GenPept">sp|P02461|CA13_HUMAN</a> COLLAGEN ALPHA 1(III) CHAIN PRECURSOR
Length = 1466
Score = 29.0 bits (63), Expect = 8.3
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 490 SXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
S G P PG G P G G GAP P
Sbjct: 886 SNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSP 917
</PRE>
<PRE>
Database: Non-redundant SwissProt sequences
Posted date: Dec 28, 1999 4:33 PM
Number of letters in database: 29,652,561
Number of sequences in database: 82,258
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27301044
Number of Sequences: 82258
Number of extensions: 501818
Number of successful extensions: 2382
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2052
Number of HSP's gapped (non-prelim): 298
length of query: 202
length of database: 29,652,561
effective HSP length: 50
effective length of query: 152
effective length of database: 25,539,661
effective search space: 3882028472
effective search space used: 3882028472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 62 (28.6 bits)
</PRE>
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