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<HTML>
<HEAD>
<TITLE>BLAST Search Results </TITLE>
</HEAD>
<BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
<A HREF="http://www.ncbi.nlm.nih.gov/BLAST/blast_form.map"> <IMG SRC="http://www.ncbi.nlm.nih.gov/BLAST/blast_results.gif" BORDER=0 ISMAP></A>
<BR><BR><PRE>
<b>BLASTP 2.0.10 [Aug-26-1999]</b>
<b><a href="http://www.ncbi.nlm.nih.gov/htbin-
post/Entrez/query?uid=9254694&form=6&db=m&Dopt=r">Reference</a>:</b>
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
<p>
<b>Query=</b> gi|134196|sp|P23832|SAMB_SALTY SAMB PROTEIN.
(424 letters)
<b>Database:</b> Non-redundant SwissProt sequences
82,258 sequences; 29,652,561 total letters
<p> <p>If you have any problems or questions with the results of this search <br>please refer to the <b><a href=http://www.ncbi.nlm.nih.gov/BLAST/blast_FAQs.html>BLAST FAQs</a></b><br><p>
<FORM NAME="BLASTFORM">
</PRE>
<CENTER>
<H3><a href="/BLAST/newoptions.html#graphical-overview"> Distribution of 13 Blast Hits on the Query Sequence</a></H3>
<input name=defline size=80 value="Mouse-over to show defline and scores. Click to show alignments">
</CENTER>
<map name=img_map>
<area shape=rect coords=69,101,523,106 href="#134196" ONMOUSEOVER='document.BLASTFORM.defline.value="P23832 SAMB PROTEIN..S= 862 E=0.0"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=69,108,522,113 href="#124421" ONMOUSEOVER='document.BLASTFORM.defline.value="P18642 IMPB PROTEIN..S= 621 E=1e-177"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=69,115,521,120 href="#2507535" ONMOUSEOVER='document.BLASTFORM.defline.value="P04152 UMUC PROTEIN..S= 521 E=8e-148"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=69,122,521,127 href="#137026" ONMOUSEOVER='document.BLASTFORM.defline.value="P22494 UMUC PROTEIN..S= 515 E=5e-146"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=69,129,522,134 href="#127507" ONMOUSEOVER='document.BLASTFORM.defline.value="P14303 MUCB PROTEIN..S= 447 E=2e-125"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=69,136,522,141 href="#127505" ONMOUSEOVER='document.BLASTFORM.defline.value="P07375 MUCB PROTEIN..S= 444 E=2e-124"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=72,143,479,148 href="#1731083" ONMOUSEOVER='document.BLASTFORM.defline.value="P54560 HYPOTHETICAL 45.9 KD PROTEIN IN GLNQ-ANSR INTERGENIC REG..S= 106 E=1e-22"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=74,150,346,155 href="#1731071" ONMOUSEOVER='document.BLASTFORM.defline.value="P54545 HYPOTHETICAL 47.0 KD PROTEIN IN GLNQ-ANSR INTERGENIC REG..S=92.4 E=1e-18"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=74,157,424,162 href="#2501652" ONMOUSEOVER='document.BLASTFORM.defline.value="Q47155 DNA-DAMAGE-INDUCIBLE PROTEIN P..S=65.6 E=2e-10"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=69,164,427,169 href="#2501651" ONMOUSEOVER='document.BLASTFORM.defline.value="P75241 HYPOTHETICAL PROTEIN MG360 HOMOLOG..S=56.6 E=9e-08"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=69,171,430,176 href="#2501650" ONMOUSEOVER='document.BLASTFORM.defline.value="Q49426 HYPOTHETICAL PROTEIN MG360..S=41.8 E=0.002"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=74,178,286,183 href="#465873" ONMOUSEOVER='document.BLASTFORM.defline.value="P34409 HYPOTHETICAL 59.1 KD PROTEIN F22B7.6 IN CHROMOSOME III..S=34.4 E=0.42"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
</map>
<CENTER>
<IMG WIDTH=529 HEIGHT=185 USEMAP=#img_map BORDER=1 SRC="nph-getgif.cgi?iblast0&20789170539406.gif" ISMAP></CENTER>
<HR>
<PRE>
<PRE>
Score E
Sequences producing significant alignments: (bits) Value
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00134196&dopt=GenPept">sp|P23832|SAMB_SALTY</a> SAMB PROTEIN <a href = #134196>862</a> 0.0
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00124421&dopt=GenPept">sp|P18642|IMPB_SALTY</a> IMPB PROTEIN <a href = #124421>621</a> e-177
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02507535&dopt=GenPept">sp|P04152|UMUC_ECOLI</a> UMUC PROTEIN <a href = #2507535>521</a> e-148
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00137026&dopt=GenPept">sp|P22494|UMUC_SALTY</a> UMUC PROTEIN <a href = #137026>515</a> e-146
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00127507&dopt=GenPept">sp|P14303|MUCB_SALTY</a> MUCB PROTEIN <a href = #127507>447</a> e-125
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00127505&dopt=GenPept">sp|P07375|MUCB_ECOLI</a> MUCB PROTEIN <a href = #127505>444</a> e-124
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=01731083&dopt=GenPept">sp|P54560|YQJW_BACSU</a> HYPOTHETICAL 45.9 KD PROTEIN IN GLNQ-A... <a href = #1731083>106</a> 1e-22
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=01731071&dopt=GenPept">sp|P54545|YQJH_BACSU</a> HYPOTHETICAL 47.0 KD PROTEIN IN GLNQ-A... <a href = #1731071> 92</a> 1e-18
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02501652&dopt=GenPept">sp|Q47155|DINP_ECOLI</a> DNA-DAMAGE-INDUCIBLE PROTEIN P <a href = #2501652> 66</a> 2e-10
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02501651&dopt=GenPept">sp|P75241|Y360_MYCPN</a> HYPOTHETICAL PROTEIN MG360 HOMOLOG <a href = #2501651> 57</a> 9e-08
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02501650&dopt=GenPept">sp|Q49426|Y360_MYCGE</a> HYPOTHETICAL PROTEIN MG360 <a href = #2501650> 42</a> 0.002
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00465873&dopt=GenPept">sp|P34409|YLW6_CAEEL</a> HYPOTHETICAL 59.1 KD PROTEIN F22B7.6 I... <a href = #465873> 34</a> 0.42
<PRE>
<a name = 134196> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00134196&dopt=GenPept">sp|P23832|SAMB_SALTY</a> SAMB PROTEIN
Length = 424
Score = 862 bits (2204), Expect = 0.0
Identities = 424/424 (100%), Positives = 424/424 (100%)
Query: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS
Sbjct: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
Query: 61 AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG
Sbjct: 61 AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ 180
RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ
Sbjct: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ 180
Query: 181 PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE 240
PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE
Sbjct: 181 PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE 240
Query: 241 APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV 300
APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV
Sbjct: 241 APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV 300
Query: 301 TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN 360
TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN
Sbjct: 301 TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN 360
Query: 361 LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA 420
LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA
Sbjct: 361 LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA 420
Query: 421 AKLT 424
AKLT
Sbjct: 421 AKLT 424
</PRE>
<PRE>
<a name = 124421> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00124421&dopt=GenPept">sp|P18642|IMPB_SALTY</a> IMPB PROTEIN
Length = 424
Score = 621 bits (1583), Expect = e-177
Identities = 298/423 (70%), Positives = 349/423 (82%)
Query: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
MFALAD+NSFYASCEKVFRPDLR+ V+VLSNNDGCVI RS EAK LGI+MG PWFQ+R
Sbjct: 1 MFALADINSFYASCEKVFRPDLRNEPVIVLSNNDGCVIARSPEAKALGIRMGQPWFQVRQ 60
Query: 61 AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
+ + + FSSNYALY SMS RVM LE L+P VE YSIDEMF+D+RGI+ CI E FG
Sbjct: 61 MRLEKKIHVFSSNYALYHSMSQRVMAVLESLSPAVEPYSIDEMFIDLRGINHCISPEFFG 120
Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ 180
QLRE V+S TGLT+GVG+ PTKTLAKSAQWA+K+W QF GV+ALT N+ R KLL LQ
Sbjct: 121 HQLREQVKSWTGLTMGVGIAPTKTLAKSAQWATKQWPQFSGVVALTAENRNRILKLLGLQ 180
Query: 181 PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE 240
PV E+WGVG R+++KLN +GI TALQLA+AN FIRKNF+V+LERTVRELNGESCISLEE
Sbjct: 181 PVGEVWGVGHRLTEKLNALGINTALQLAQANTAFIRKNFSVILERTVRELNGESCISLEE 240
Query: 241 APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV 300
APP KQQIVCSRSFGER+T +AM QAV Q+AERAAEKLRGERQ+CR + FV+TSPFAV
Sbjct: 241 APPAKQQIVCSRSFGERITDKDAMHQAVVQYAERAAEKLRGERQYCRQVTTFVRTSPFAV 300
Query: 301 TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN 360
EP Y N A EKL +PTQD+RDIIAAA RAL+ +W +G+RY KAG ML DFTP+G++Q
Sbjct: 301 KEPCYSNAAVEKLPLPTQDSRDIIAAACRALNHVWREGYRYMKAGVMLADFTPSGIAQPG 360
Query: 361 LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA 420
LFDE+QPR+ SE+LM+ LD +N GKGK+WFAGRG APEWQMKRE+LS YTT+W DIP
Sbjct: 361 LFDEIQPRKNSEKLMKTLDELNQSGKGKVWFAGRGTAPEWQMKREMLSQCYTTKWRDIPL 420
Query: 421 AKL 423
A+L
Sbjct: 421 ARL 423
</PRE>
<PRE>
<a name = 2507535> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02507535&dopt=GenPept">sp|P04152|UMUC_ECOLI</a> UMUC PROTEIN
Length = 422
Score = 521 bits (1328), Expect = e-148
Identities = 265/424 (62%), Positives = 318/424 (74%), Gaps = 4/424 (0%)
Query: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
MFAL DVN+FYASCE VFRPDL + VVVLSNNDGCVI R+AEAK LG+KMG PWF+ +
Sbjct: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60
Query: 61 AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
V+ FSSNY LYA MSNRVM LEEL+PRVE YSIDE F D+ G+ +C D DFG
Sbjct: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120
Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWS-QFGGVLALTLHNQKRTEKLLSL 179
R++R V T LT+GVG+ TKTLAK A A+K+W Q GGV+ L+ N +R KL+S
Sbjct: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLS--NLERQRKLMSA 178
Query: 180 QPVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLE 239
PV+++WG+GRRISKKL+ MGI T L LA + FIRK+FNVVLERTVREL GE C+ LE
Sbjct: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238
Query: 240 EAPPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFA 299
E P KQ+I+CSRSFGER+T Y +MRQA+C +A RAAEKLR E Q+CR I+ F+KTSPFA
Sbjct: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298
Query: 300 VTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQL 359
+ EPYYGN AS KLL PTQD+RDII AA R+LD IW GHRY KAG ML DF GV+QL
Sbjct: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358
Query: 360 NLFDEVQPRERSEQLMQVLDGIN-HPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADI 418
NLFD+ PR SEQLM V+D +N G+G ++FAG+GI +WQMKR +LSP YTTR +D+
Sbjct: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418
Query: 419 PAAK 422
K
Sbjct: 419 LRVK 422
</PRE>
<PRE>
<a name = 137026> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00137026&dopt=GenPept">sp|P22494|UMUC_SALTY</a> UMUC PROTEIN
Length = 422
Score = 515 bits (1313), Expect = e-146
Identities = 267/424 (62%), Positives = 317/424 (73%), Gaps = 4/424 (0%)
Query: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
MFAL DVNSFYASCE VFRPDL R VVVLSNNDGCVI SAEAK+LGI G P+F+ +
Sbjct: 1 MFALCDVNSFYASCETVFRPDLCGRPVVVLSNNDGCVIACSAEAKQLGIAPGEPYFKQKE 60
Query: 61 AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
V+ FSSNY LYA MSNRVM LEE+ PRVE YSIDE F D+ G+ +C D DFG
Sbjct: 61 RFRRSGVVCFSSNYELYADMSNRVMTTLEEMVPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120
Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWS-QFGGVLALTLHNQKRTEKLLSL 179
R++R V T LT+GVG+ TKTLAK A A+K+W Q GV+ L+ N R +LL+L
Sbjct: 121 REIRATVLKRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTDGVVDLS--NIDRQRRLLAL 178
Query: 180 QPVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLE 239
PVE++WGVGRRISKKLN +GI TAL L+ + IRK+FNVVLERTVREL GE C+ LE
Sbjct: 179 IPVEDVWGVGRRISKKLNALGIKTALDLSEQSTWIIRKHFNVVLERTVRELRGEPCLELE 238
Query: 240 EAPPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFA 299
E P KQ+IVCSRSFGERVT YE MRQAV +A RAAEKLRGE Q+CR I+ FVKTSPFA
Sbjct: 239 EFAPAKQEIVCSRSFGERVTDYEEMRQAVYSYAARAAEKLRGEHQYCRFISTFVKTSPFA 298
Query: 300 VTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQL 359
+ EPYYGN A+ LL PTQD+RDII AAV+ LD+IW DGHRY KAG ML DF GV+QL
Sbjct: 299 LNEPYYGNSAAVTLLTPTQDSRDIINAAVKCLDKIWRDGHRYQKAGVMLGDFFSQGVAQL 358
Query: 360 NLFDEVQPRERSEQLMQVLDGIN-HPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADI 418
NLFD+ PR S +LM+VLD +N GKG ++FAG+G++ +W MKRE+LSP YTTR++D+
Sbjct: 359 NLFDDNAPRAGSAKLMEVLDHLNAKDGKGTLYFAGQGMSQQWAMKREMLSPRYTTRYSDL 418
Query: 419 PAAK 422
K
Sbjct: 419 LRVK 422
</PRE>
<PRE>
<a name = 127507> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00127507&dopt=GenPept">sp|P14303|MUCB_SALTY</a> MUCB PROTEIN
Length = 421
Score = 447 bits (1137), Expect = e-125
Identities = 239/423 (56%), Positives = 292/423 (68%), Gaps = 3/423 (0%)
Query: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
MFAL DVN YASCE+ FRPDL +R+V VLSNNDG ++ R+ AKK G+KMG P+F++R
Sbjct: 1 MFALIDVNGMYASCEQAFRPDLANRAVAVLSNNDGNIVARNYLAKKAGLKMGDPYFKVRP 60
Query: 61 AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
+ FSSNY LYASMS R +E LA VEQYSIDE+F+D +GI + + + FG
Sbjct: 61 IIERHNIAIFSSNYTLYASMSARFAAVVESLASHVEQYSIDELFVDCKGITAAMSLDAFG 120
Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ 180
RQLRE VR T L GVG+ TKTLAK A+K W GGV+AL + R +KL+S+
Sbjct: 121 RQLREEVRRHTTLVCGVGIARTKTLAKLCNHAAKTWPATGGVVALD--DGARLKKLMSIL 178
Query: 181 PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE 240
PV E+WGVG R K L TMGI T L LARA+ IRK F VVLERTVREL GE+C SLEE
Sbjct: 179 PVAEVWGVGHRTEKALATMGIKTVLDLARADTRLIRKTFGVVLERTVRELRGEACFSLEE 238
Query: 241 APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV 300
PP KQQIV SRSFG+RV T M+QAV A RAAEKLR ERQ+CR I+VF++TSP++V
Sbjct: 239 NPPAKQQIVVSRSFGQRVETLTDMQQAVTGFAARAAEKLRNERQYCRVISVFIRTSPYSV 298
Query: 301 TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN 360
+ Y N A+EKL + TQD+R II AA AL RIW + YAKAG ML DF+ +QL+
Sbjct: 299 RDTQYANQATEKLTVATQDSRTIIQAAQAALARIWREDIAYAKAGVMLADFSGK-EAQLD 357
Query: 361 LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA 420
LFD P SE LM VLDGIN GK +++FAG+GI + M+R++LSP YTT W IP
Sbjct: 358 LFDSATPSAGSEALMAVLDGINRRGKNQLFFAGQGIDNSFAMRRQMLSPDYTTDWRSIPI 417
Query: 421 AKL 423
A +
Sbjct: 418 ATI 420
</PRE>
<PRE>
<a name = 127505> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00127505&dopt=GenPept">sp|P07375|MUCB_ECOLI</a> MUCB PROTEIN
Length = 420
Score = 444 bits (1129), Expect = e-124
Identities = 239/423 (56%), Positives = 293/423 (68%), Gaps = 4/423 (0%)
Query: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
MFAL DVN YASCE+ FRPDL +R+V VLSNNDG ++ R+ AKK G+KMG P+F++R
Sbjct: 1 MFALIDVNGMYASCEQAFRPDLANRAVAVLSNNDGNIVARNYLAKKAGLKMGDPYFKVRP 60
Query: 61 AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
+ FSSNY LYASMS R +E LA VEQYSIDE+F+D +GI + + + FG
Sbjct: 61 IIERHNIAIFSSNYTLYASMSARFAAVVESLASHVEQYSIDELFVDCKGITAAMSLDAFG 120
Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ 180
RQLRE VR T L GVG+ TKTLAK A+K W GGV+AL + R +KL+S+
Sbjct: 121 RQLREEVRRHTTLVCGVGIARTKTLAKLCNHAAKTWPATGGVVALD--DGARLKKLMSIL 178
Query: 181 PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE 240
PV E+WGVG R K L TMGI T L LARA+ IRK F VVLERTVREL GE+C SLEE
Sbjct: 179 PVAEVWGVGHRTEKALATMGIKTVLDLARADTRLIRKTFGVVLERTVRELRGEACFSLEE 238
Query: 241 APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV 300
PP KQQIV SRSFG+RV T M+QAV A RAAEKLR ERQ+CR I+VF++TSP++V
Sbjct: 239 NPPAKQQIVVSRSFGQRVETLTDMQQAVTGFAARAAEKLRNERQYCRVISVFIRTSPYSV 298
Query: 301 TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN 360
+ Y N A+EKL + TQD+R II AA +AL RIW + YAKAG ML DF+ +QL+
Sbjct: 299 RDTQYANQATEKLTVATQDSRTIIQAA-QALARIWREDIAYAKAGVMLADFSGK-EAQLD 356
Query: 361 LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA 420
LFD P SE LM VLDGIN GK +++FAG+GI + M+R++LSP YTT W IP
Sbjct: 357 LFDSATPSAGSEALMAVLDGINRRGKNQLFFAGQGIDNSFAMRRQMLSPDYTTDWRSIPI 416
Query: 421 AKL 423
A +
Sbjct: 417 ATI 419
</PRE>
<PRE>
<a name = 1731083> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=01731083&dopt=GenPept">sp|P54560|YQJW_BACSU</a> HYPOTHETICAL 45.9 KD PROTEIN IN GLNQ-ANSR INTERGENIC REGION
Length = 412
Score = 106 bits (261), Expect = 1e-22
Identities = 107/393 (27%), Positives = 171/393 (43%), Gaps = 33/393 (8%)
Query: 4 LADVNSFYASCEKVFRPDLRDRSVVVLSNND---GCVIPRSAEAKKLGIKMGVPWFQLRS 60
L D+ SFYAS EK P L++R V+V + + G V+ AK+ G+ ++ +
Sbjct: 9 LVDMQSFYASVEKAENPHLKNRPVIVSGDPEKRGGVVLAACPLAKQKGVVNASRLWEAQE 68
Query: 61 AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFE-DF 119
K PE V+ Y +S ++ LEE VE YSIDE F+DI G +
Sbjct: 69 -KCPEAVV-LRPRMQRYIDVSLQITAILEEYTDLVEPYSIDEQFMDITGSQKLFGTPMEI 126
Query: 120 GRQLREHVRSGTGLTIGVGMGPTKTLAKSA--QWASKEWSQFGGVLALTLHNQKRTEKLL 177
+ ++ + G+ VG+GP K LAK A +A K + G+ LT N K L
Sbjct: 127 AKSIQGRIMREIGVYARVGIGPNKALAKIACDNFAKKNKN---GIFTLTKENMKTEMWPL 183
Query: 178 SLQPVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCIS 237
PV ++GVG R+ LN MGI+T LA ++K + + NG
Sbjct: 184 ---PVGSMFGVGSRMKHHLNRMGISTIGGLAAFPLDLLKKKWGINGHVLWMTANG----- 235
Query: 238 LEEAPPPKQQIVCSRSFGERVT---TYE----AMRQAVCQHAERAAEKLRGERQFCRHIA 290
++ +P + ++ G +T YE ++ + + +E + R + ++
Sbjct: 236 IDYSPVSTSSLDGQKAIGHGMTLPRDYEHFDKEIKVVLLELSEEVCRRSRNAGVMGQTVS 295
Query: 291 VFVKTSPFAVTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLND 350
V + + F + + KL PT T+D+ A R W DG + G L+
Sbjct: 296 VSCRGADFDWPTGFNRQV---KLAEPTNSTQDVYEAVRRLFLTFW-DGKPVRRLGVNLSQ 351
Query: 351 FTPTGVSQLNLFDEVQPRERSEQLMQVLDGINH 383
+ + QLNLF Q + L V+DGI +
Sbjct: 352 LSSDDIWQLNLF---QDYAKKMSLGYVMDGIKN 381
</PRE>
<PRE>
<a name = 1731071> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=01731071&dopt=GenPept">sp|P54545|YQJH_BACSU</a> HYPOTHETICAL 47.0 KD PROTEIN IN GLNQ-ANSR INTERGENIC REGION
Length = 414
Score = 92.4 bits (226), Expect = 1e-18
Identities = 73/257 (28%), Positives = 121/257 (46%), Gaps = 17/257 (6%)
Query: 6 DVNSFYASCEKVFRPDLRDRSVVVLSN---NDGCVIPRSAEAKKLGIKMGVPWFQLRSAK 62
D+NSFYAS E + P LR + V V N G V+ S EA+ G+K +P +Q +
Sbjct: 12 DMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPVWQAKR-H 70
Query: 63 FPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFGRQ 122
PE +I N+ Y + S + L E VE SIDE ++D+ + ++
Sbjct: 71 CPE-LIVLPPNFDRYRNSSRAMFTILREYTDLVEPVSIDEGYMDMTDTPYSSRALETAKE 129
Query: 123 LREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQPV 182
++ ++ L +G+ P K LAK A K L +T+ +++ +L PV
Sbjct: 130 IQSRLQKELLLPSSIGIAPNKFLAKMASDMKKP-------LGITILRKRQVPDILWPLPV 182
Query: 183 EEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEEAP 242
E+ GVG++ ++KL +GI T +LA A+ +++ + R + NG + AP
Sbjct: 183 GEMHGVGKKTAEKLKGLGIHTIGELAAADEHSLKRLLGINGPRLKNKANG-----IHHAP 237
Query: 243 PPKQQIVCSRSFGERVT 259
++I +S G T
Sbjct: 238 VDPERIYEFKSVGNSST 254
</PRE>
<PRE>
<a name = 2501652> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02501652&dopt=GenPept">sp|Q47155|DINP_ECOLI</a> DNA-DAMAGE-INDUCIBLE PROTEIN P
Length = 351
Score = 65.6 bits (157), Expect = 2e-10
Identities = 74/341 (21%), Positives = 139/341 (40%), Gaps = 41/341 (12%)
Query: 6 DVNSFYASCEKVFRPDLRDRSVVVLSNND--GCVIPRSAEAKKLGIKMGVPWFQLRSAKF 63
D++ F+A+ E P LRD + + + + G + + A+K G++ +P + K
Sbjct: 8 DMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM--ALKL 65
Query: 64 PEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDF-GRQ 122
+ + Y SN + R+E S+DE +LD+ C ++
Sbjct: 66 CPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQE 125
Query: 123 LREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQPV 182
+R+ + + LT G+ P K LAK A +K QF + L P+
Sbjct: 126 IRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQF-------VITPAEVPAFLQTLPL 178
Query: 183 EEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNF----NVVLERT----VRELNGES 234
+I GVG+ + KL MG+ T + + + + K F ++ ER+ R++N E
Sbjct: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238
Query: 235 CISLEEAPPPKQQIVCSRSFGERV---TTYEAMRQAVCQHAERAAEKLRGERQFCRHIAV 291
++ + R+ E + + EA+ + + ER K++ + R V
Sbjct: 239 L---------RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GV 288
Query: 292 FVKTSPFAVTEPYYGNLASEKLLIPTQDTRDIIAAAVRALD 332
+K F T +++ + P + D+IA A + D
Sbjct: 289 KLKFDDFQQT--------TQEHVWPRLNKADLIATARKTWD 321
</PRE>
<PRE>
<a name = 2501651> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02501651&dopt=GenPept">sp|P75241|Y360_MYCPN</a> HYPOTHETICAL PROTEIN MG360 HOMOLOG
Length = 412
Score = 56.6 bits (134), Expect = 9e-08
Identities = 76/343 (22%), Positives = 145/343 (42%), Gaps = 32/343 (9%)
Query: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPR-SAEAKKLGIKMGVPWFQLR 59
+F D ++F+AS E++ P+L+++ ++V + V+ + A+ GIK G+P +
Sbjct: 19 LFFYFDFDAFFASVEEIENPELKNQPLIVGNRTSRSVVSTCNYLARSYGIKSGMP--IAK 76
Query: 60 SAKFPEPVIAFSSNYALYASMSNRVMVHL-EELAPRVEQYSIDEMFLDIRGIDSCIDFED 118
+ + I +S++ Y S ++ + E+ V SIDE F+ R + F
Sbjct: 77 ALELCPQAIFATSHFRNYRKYSAKIFAMIAEQFNLEVHTLSIDEGFVCFRDLSPRKAF-S 135
Query: 119 FGRQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLS 178
++++ HV I +G+ TLAK +K + GV + KR KL
Sbjct: 136 LAKRIQRHVYEQLNFHISIGISNQFTLAKIFSNQAKPF----GVKSCFSKEVKR--KLWP 189
Query: 179 LQPVEEIWGVGRRISKKLNTMGITTALQLARA-NPTFIRKNFNVVLERTVRELNGESCIS 237
L P+ E+ G+G+R LA+ + T ++ F + E ++
Sbjct: 190 L-PIVELPGIGKRQLDNAFKNNFHKIGDLAKCKDVTLFKRVFGIAWESL-------HAVA 241
Query: 238 LEEAPPPKQQIVCSRSFGERVT------TYEAMRQAVCQHAERAAEKLRGERQFCRHIAV 291
L E +Q V SRS T + ++Q + +L+ Q C+ + V
Sbjct: 242 LGETYTQSEQDVKSRSIAVSETLEYLNYSSNQLQQKLTSIFNELYARLQLSFQMCKGVVV 301
Query: 292 FVKTSPFAVTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRI 334
+K++ F V N S+ + T D + ++ + +R+
Sbjct: 302 QLKSNDFIV------NSHSQSIKKYTADYQTLLVIVKKLFNRL 338
</PRE>
<PRE>
<a name = 2501650> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02501650&dopt=GenPept">sp|Q49426|Y360_MYCGE</a> HYPOTHETICAL PROTEIN MG360
Length = 411
Score = 41.8 bits (96), Expect = 0.002
Identities = 73/353 (20%), Positives = 152/353 (42%), Gaps = 46/353 (13%)
Query: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPR-SAEAKKLGIKMGVPWFQLR 59
+F D ++F+AS E++ P+L ++ ++V + V+ + A+ GI+ G+ L+
Sbjct: 19 IFLYFDFDAFFASVEELENPELVNQPLIVGNRFSRSVVSTCNYVARSYGIRSGMS--ILK 76
Query: 60 SAKFPEPVIAFSSNYALYASMSNRVMVHLEE-LAPRVEQYSIDEMFLDIRGIDSCIDFED 118
+ + I SN+ Y S R+ +E + +++ S+DE + I F
Sbjct: 77 ALELCPNAIFAHSNFRNYRKHSKRIFSVIESTFSLKIDVLSVDEGVACFQNISFKKAFL- 135
Query: 119 FGRQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLS 178
++++ V + I +G+ +AK +K + G+ + ++ + K+ KL
Sbjct: 136 IAKKIKNFVFQNLRIKISIGISDHFLIAKIFSNQAKPF----GIKSCSVKDIKK--KLWP 189
Query: 179 LQPVEEIWGVGRR----ISK----KLNTMGITTALQLARANPTFIRKNFNVVLERTVREL 230
L P+ EI G+G + + K K+N + + + + ++K F E
Sbjct: 190 L-PITEIPGIGEKHIDLVFKNNFYKINDLAVC-------EDASLLKKVFGNFWESL---- 237
Query: 231 NGESCISLEEAPPPKQQIVCSRSFGERVT------TYEAMRQAVCQHAERAAEKLRGERQ 284
+SL + V SRSF T + + + + Q ++ +L+ Q
Sbjct: 238 ---KAVSLGKWYTDNNNQVKSRSFAVSETLEDLNYSNNQLNKKLTQIFDQLFIRLQLSSQ 294
Query: 285 FCRHIAVFVKTSPFAVTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVD 337
C+ I V +K++ F V N S K+ + D R +++ R +R+ ++
Sbjct: 295 VCKGIVVQLKSNDFIV------NSHSNKMKKYSNDYRKLLSITKRLFNRLLIN 341
</PRE>
<PRE>
<a name = 465873> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00465873&dopt=GenPept">sp|P34409|YLW6_CAEEL</a> HYPOTHETICAL 59.1 KD PROTEIN F22B7.6 IN CHROMOSOME III
Length = 518
Score = 34.4 bits (77), Expect = 0.42
Identities = 25/102 (24%), Positives = 47/102 (45%), Gaps = 4/102 (3%)
Query: 6 DVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRSAKFPE 65
D+++++A+ E P LR +V + + + + A++ G++ G+P F S K
Sbjct: 89 DMDAYFAAVEMRDNPALR--TVPMAVGSSAMLSTSNYLARRFGVRAGMPGFI--SNKLCP 144
Query: 66 PVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDI 107
+ NY Y +S + E V S+DE F+D+
Sbjct: 145 SLTIVPGNYPKYTKVSRQFSQIFMEYDSDVGMMSLDEAFIDL 186
</PRE>
<PRE>
Score = 34.0 bits (76), Expect = 0.55
Identities = 26/88 (29%), Positives = 38/88 (42%), Gaps = 7/88 (7%)
Query: 117 EDFGRQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRT-EK 175
E+ R++R V TGLT G+ LAK +K Q+ L N K +
Sbjct: 253 EEAVREIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQY------VLENDKNAIME 306
Query: 176 LLSLQPVEEIWGVGRRISKKLNTMGITT 203
L P+ ++ G+GR +L M I T
Sbjct: 307 FLKDLPIRKVGGIGRVCEAQLKAMDIQT 334
</PRE>
<PRE>
Database: Non-redundant SwissProt sequences
Posted date: Dec 27, 1999 4:57 PM
Number of letters in database: 29,652,561
Number of sequences in database: 82,258
Lambda K H
0.321 0.135 0.406
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24755695
Number of Sequences: 82258
Number of extensions: 1024142
Number of successful extensions: 2292
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2264
Number of HSP's gapped (non-prelim): 13
length of query: 424
length of database: 29,652,561
effective HSP length: 51
effective length of query: 373
effective length of database: 25,457,403
effective search space: 9495611319
effective search space used: 9495611319
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 66 (30.1 bits)
</PRE>
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