1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
|
<HTML>
<HEAD>
</HEAD>
<BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
<IMG SRC="images/head_results.gif" ALT="Header of the page" BORDER="0"NAME="BlastHeaderGif" WIDTH="600" HEIGHT="45" ALIGN="middle">
<form action="Blast.cgi" enctype="application/x-www-form-urlencoded" method="POST"><input name="ALIGNMENTS" type="hidden" value="50"><input name="AUTO_FORMAT" type="hidden" value="on"><input name="CLIENT" type="hidden" value="web"><input name="DESCRIPTIONS" type="hidden" value="100"><input name="EXPECT" type="hidden" value="10"><input name="HITLIST_SIZE" type="hidden" value="100"><input name="LAYOUT" type="hidden" value="OneWindow"><input name="NCBI_GI" type="hidden" value="checked"><input name="PAGE" type="hidden" value="Translations"><input name="RID" type="hidden" value="1032425806-013487-3242"><input name="RTOE" type="hidden" value="47"><input name="SHOW_OVERVIEW" type="hidden" value="checked"><input name="STEP_NUMBER" type="hidden" value="1"><input name="CMD" type="hidden" value="Get"></form>
<form action="Blast.cgi" enctype="application/x-www-form-urlencoded" method="POST" TARGET=""><input name="ALIGNMENTS" type="hidden" value="50"><input name="AUTO_FORMAT" type="hidden" value="on"><input name="CLIENT" type="hidden" value="web"><input name="DESCRIPTIONS" type="hidden" value="100"><input name="EXPECT" type="hidden" value="10"><input name="HITLIST_SIZE" type="hidden" value="100"><input name="LAYOUT" type="hidden" value="OneWindow"><input name="NCBI_GI" type="hidden" value="checked"><input name="PAGE" type="hidden" value="Translations"><input name="RID" type="hidden" value="1032425806-013487-3242"><input name="RTOE" type="hidden" value="47"><input name="SHOW_OVERVIEW" type="hidden" value="checked"><input name="STEP_NUMBER" type="hidden" value="1"><input name="CMD" type="hidden" value="Get">
<p><!--
QBlastInfoBegin
Status=READY
QBlastInfoEnd
--><p><TITLE> RID=1032425806-013487-3242, </TITLE>
<b>BLASTX 2.2.4 [Aug-26-2002]</b>
<pre>
<b><a href="http://www.ncbi.nlm.nih.gov/htbin-
post/Entrez/query?uid=9254694&form=6&db=m&Dopt=r">Reference</a>:</b>
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
<p>
RID: 1032425806-013487-3242
<p>
<b>Query=</b>
(577 letters)
<p>
<b>Database:</b> All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
1,171,253 sequences; 370,891,306 total letters
<p> <p>If you have any problems or questions with the results of this search <br>please refer to the <b><a href=http://www.ncbi.nlm.nih.gov/blast/blast_FAQs.html>BLAST FAQs</a></b><br><p>
<a href="Blast.cgi?CMD=Get&RID=1032425806-013487-3242&FORMAT_OBJECT=TaxBlast" TARGET="Taxonomy BLAST Results for 1032425806-013487-3242">Taxonomy reports</a>
<BR>
<PRE>
Score E
Sequences producing significant alignments: (bits) Value
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=22725997&dopt=GenPept" >gb|AAN04997.1|</a> (AC105744) putative transcription initiation... <a href = #22725997>292</a> 2e-78
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15235418&dopt=GenPept" >ref|NP_192998.1|</a> (NM_117331) putative protein; protein id: ... <a href = #15235418>179</a> 2e-44
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=06862918&dopt=GenPept" >gb|AAF30307.1|AC018907_7</a> (AC018907) putative RING zinc fing... <a href = #6862918> 38</a> 0.067
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=18397483&dopt=GenPept" >ref|NP_566274.1|</a> (NM_111489) putative RING zinc finger prot... <a href = #18397483> 38</a> 0.067
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21928149&dopt=GenPept" >gb|AAM78102.1|</a> (AY125510) AT5g19080/T16G12_120 [Arabidopsis... <a href = #21928149> 38</a> 0.067
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=18398633&dopt=GenPept" >ref|NP_566356.1|</a> (NM_111812) expressed protein; protein id:... <a href = #18398633> 38</a> 0.087
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15239642&dopt=GenPept" >ref|NP_197409.1|</a> (NM_121913) unknown protein; protein id: A... <a href = #15239642> 37</a> 0.11
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=17551576&dopt=GenPept" >ref|NP_510817.1|</a> (NM_078416) F10D7.5b.p [Caenorhabditis ele... <a href = #17551576> 37</a> 0.19
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=19225030&dopt=GenPept" >gb|AAL86506.1|AC099040_10</a> (AC099040) putative hydroxyprolin... <a href = #19225030> 37</a> 0.19
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21913050&dopt=GenPept" >gb|AAM81093.1|U40945_8</a> (U40945) Hypothetical protein F10D7.... <a href = #21913050> 37</a> 0.19
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=17551578&dopt=GenPept" >ref|NP_510818.1|</a> (NM_078417) D. melanogaster finger protein... <a href = #17551578> 37</a> 0.19
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21913047&dopt=GenPept" >gb|AAM81090.1|U40945_5</a> (U40945) Hypothetical protein F10D7.... <a href = #21913047> 37</a> 0.19
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=07498826&dopt=GenPept" >pir||T16028</a> hypothetical protein F10D7.5 - Caenorhabditis e... <a href = #7498826> 37</a> 0.19
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15240979&dopt=GenPept" >ref|NP_195765.1|</a> (NM_120223) putative protein; protein id: ... <a href = #15240979> 36</a> 0.25
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=07292914&dopt=GenPept" >gb|AAF48305.1|</a> (AE003493) CG9941-PA [Drosophila melanogaster] <a href = #7292914> 35</a> 0.43
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21618140&dopt=GenPept" >gb|AAM67190.1|</a> (AY088884) putative RING zinc finger protein... <a href = #21618140> 35</a> 0.43
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15242675&dopt=GenPept" >ref|NP_195940.1|</a> (NM_120398) expressed protein; protein id:... <a href = #15242675> 35</a> 0.43
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=17545794&dopt=GenPept" >ref|NP_519196.1|</a> (NC_003295) PROBABLE TWO-COMPONENT SYSTEM ... <a href = #17545794> 35</a> 0.74
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21292673&dopt=GenPept" >gb|EAA04818.1|</a> (AAAB01008810) agCP6745 [Anopheles gambiae s... <a href = #21292673> 35</a> 0.74
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=22999586&dopt=GenPept" >gb|ZP_00043559.1|</a> (NZ_AAAN01000154) hypothetical protein [M... <a href = #22999586> 35</a> 0.74
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15241556&dopt=GenPept" >ref|NP_199282.1|</a> (NM_123836) putative protein; protein id: ... <a href = #15241556> 35</a> 0.74
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15231808&dopt=GenPept" >ref|NP_190909.1|</a> (NM_115201) putative protein; protein id: ... <a href = #15231808> 34</a> 0.96
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=03043612&dopt=GenPept" >dbj|BAA25470.1|</a> (AB011116) KIAA0544 protein [Homo sapiens] <a href = #3043612> 34</a> 1.3
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=17550346&dopt=GenPept" >ref|NP_510385.1|</a> (NM_077984) Zinc finger, C3HC4 type (RING ... <a href = #17550346> 34</a> 1.3
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21356667&dopt=GenPept" >ref|NP_649187.1|</a> (NM_140930) CG7298 gene product [Drosophil... <a href = #21356667> 33</a> 1.6
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=23093055&dopt=GenPept" >gb|AAF49059.2|</a> (AE003514) CG7298-PA [Drosophila melanogaster] <a href = #23093055> 33</a> 1.6
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=20891615&dopt=GenPept" >ref|XP_148077.1|</a> (XM_148077) RIKEN cDNA 2610042J20 [Mus mus... <a href = #20891615> 33</a> 1.6
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=23002453&dopt=GenPept" >gb|ZP_00046129.1|</a> (NZ_AAAB01000003) hypothetical protein [L... <a href = #23002453> 33</a> 1.6
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=12848068&dopt=GenPept" >dbj|BAB27816.1|</a> (AK011747) Zinc finger, C3HC4 type (RING fi... <a href = #12848068> 33</a> 1.6
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=18403707&dopt=GenPept" >ref|NP_566724.1|</a> (NM_113229) auxin-regulated protein; prote... <a href = #18403707> 33</a> 2.1
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21593715&dopt=GenPept" >gb|AAM65682.1|</a> (AY088137) unknown [Arabidopsis thaliana] <a href = #21593715> 33</a> 2.1
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=07939538&dopt=GenPept" >dbj|BAA95741.1|</a> (AB025608) contains similarity to ankyrin l... <a href = #7939538> 33</a> 2.1
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15242304&dopt=GenPept" >ref|NP_199323.1|</a> (NM_123878) putative protein; protein id: ... <a href = #15242304> 33</a> 2.1
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=22331278&dopt=GenPept" >ref|NP_683586.1|</a> (NM_148744) auxin-regulated protein; prote... <a href = #22331278> 33</a> 2.1
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=18414200&dopt=GenPept" >ref|NP_567428.1|</a> (NM_117514) Expressed protein; protein id:... <a href = #18414200> 33</a> 2.8
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15387746&dopt=GenPept" >emb|CAC59873.1|</a> (AL160371) probable heat shock protein hslu... <a href = #15387746> 33</a> 2.8
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=14587218&dopt=GenPept" >dbj|BAB61152.1|</a> (AP003199) contains ESTs AU068079(C11823),A... <a href = #14587218> 33</a> 2.8
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15224462&dopt=GenPept" >ref|NP_181354.1|</a> (NM_129376) unknown protein; protein id: A... <a href = #15224462> 32</a> 3.7
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=22296435&dopt=GenPept" >dbj|BAC10202.1|</a> (AP004395) contains ESTs AU055804(S20063),A... <a href = #22296435> 32</a> 4.8
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=19922258&dopt=GenPept" >ref|NP_610973.1|</a> (NM_137129) CG12863 gene product [Drosophi... <a href = #19922258> 32</a> 4.8
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21627199&dopt=GenPept" >gb|AAF58228.2|</a> (AE003814) CG12863-PA [Drosophila melanogaster] <a href = #21627199> 32</a> 4.8
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15128197&dopt=GenPept" >gb|AAK84420.1|AF400063_1</a> (AF400063) neuralized 1 [Mus muscu... <a href = #15128197> 32</a> 6.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=10946688&dopt=GenPept" >ref|NP_067335.1|</a> (NM_021360) neuralized homolog (Drosophila... <a href = #10946688> 32</a> 6.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15226959&dopt=GenPept" >ref|NP_181076.1|</a> (NM_129085) unknown protein; protein id: A... <a href = #15226959> 32</a> 6.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=17231254&dopt=GenPept" >ref|NP_487802.1|</a> (NC_003272) oligopeptide binding protein o... <a href = #17231254> 32</a> 6.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15320749&dopt=GenPept" >ref|NP_203261.1|</a> (NC_003083) IAP-4 [Epiphyas postvittana nu... <a href = #15320749> 32</a> 6.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=22531056&dopt=GenPept" >gb|AAM97032.1|</a> (AY136366) unknown protein [Arabidopsis thal... <a href = #22531056> 32</a> 6.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=20890044&dopt=GenPept" >ref|XP_123433.1|</a> (XM_123433) similar to neuralized homolog ... <a href = #20890044> 32</a> 6.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15420883&dopt=GenPept" >gb|AAK97495.1|AF401228_1</a> (AF401228) neuralized [Mus musculus] <a href = #15420883> 32</a> 6.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=18590406&dopt=GenPept" >ref|XP_085974.1|</a> (XM_085974) similar to zinc finger protein... <a href = #18590406> 32</a> 6.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=07489906&dopt=GenPept" >pir||S68824</a> rngB protein, cytosolic - slime mold (Dictyoste... <a href = #7489906> 32</a> 6.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=06635096&dopt=GenPept" >emb|CAB64571.1|</a> (AL135898) hypothetical protein L673.04 [Le... <a href = #6635096> 32</a> 6.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=14583262&dopt=GenPept" >ref|NP_127506.1|</a> (NC_002532) replicase ORF1ab polyprotein [... <a href = #14583262> 31</a> 8.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15221532&dopt=GenPept" >ref|NP_174371.1|</a> (NM_102823) hypothetical protein; protein ... <a href = #15221532> 31</a> 8.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00133455&dopt=GenPept" >sp|P19811|RPOA_EAV</a> POL polyprotein (ORF1A/1B) [Contains: RN... <a href = #133455> 31</a> 8.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=22047436&dopt=GenPept" >ref|XP_094260.3|</a> (XM_094260) similar to neuralized [Homo sa... <a href = #22047436> 31</a> 8.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21617976&dopt=GenPept" >gb|AAM67026.1|</a> (AY088707) unknown [Arabidopsis thaliana] <a href = #21617976> 31</a> 8.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=18448645&dopt=GenPept" >gb|AAL69890.1|AF419159_1</a> (AF419159) neuralized [Xenopus lae... <a href = #18448645> 31</a> 8.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=18399792&dopt=GenPept" >ref|NP_566438.1|</a> (NM_112128) expressed protein; protein id:... <a href = #18399792> 31</a> 8.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=20468614&dopt=GenPept" >ref|XP_116162.1|</a> (XM_116162) similar to evidence:NAS~hypoth... <a href = #20468614> 31</a> 8.2
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=05732038&dopt=GenPept" >gb|AAC32390.3|</a> (AF082873) histidine kinase [Herbaspirillum ... <a href = #5732038> 31</a> 8.2
</PRE>
<CENTER><b><FONT color="green">Alignments</FONT></b></CENTER>
</form>
<script src="blastResult.js"></script><table border="0"><tr><td><FORM method="post" action="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?SUBMIT=y" name="submitterTop"><input type=button value="Get selected sequences" onClick="finalSubmit(0, 'getSeqAlignment', 'getSeqGi', 'submitterTop')"><input type="hidden" name="db" value=""><input type="hidden" name="term" value=""><input type="hidden" name="doptcmdl" value="docsum"><input type="hidden" name="cmd" value="search"></form></td><td><FORM><input type="button" value="Select all" onClick="handleCheckAll('select', 'getSeqAlignment', 'getSeqGi')"></form></td><td><FORM><input type="button" value="Deselect all" onClick="handleCheckAll('deselect', 'getSeqAlignment', 'getSeqGi')"></form></td></tr></table><form name="getSeqAlignment">
<PRE>
<input type="checkbox" name="getSeqGi" value="22725997" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 22725997></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=22725997&dopt=GenPept" >gb|AAN04997.1|</a> (AC105744) putative transcription initiation factor [Oryza sativa
(japonica cultivar-group)]
Length = 532
Score = 292 bits (747), Expect = 2e-78
Identities = 140/141 (99%), Positives = 140/141 (99%)
Frame = +3
Query: 153 MGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332
MGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALS ARCLVCSAPITNLIREY
Sbjct: 1 MGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSGARCLVCSAPITNLIREY 60
Query: 333 NVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI 512
NVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI
Sbjct: 61 NVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI 120
Query: 513 LEDETGQYQYQGQMEGSQSST 575
LEDETGQYQYQGQMEGSQSST
Sbjct: 121 LEDETGQYQYQGQMEGSQSST 141
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="15235418" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 15235418></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15235418&dopt=GenPept" >ref|NP_192998.1|</a> (NM_117331) putative protein; protein id: At4g12610.1 [Arabidopsis
thaliana]
<a name = 5823572></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=05823572&dopt=GenPept" >emb|CAB53754.1|</a> (AL049730) putative protein [Arabidopsis thaliana]
<a name = 7267963></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=07267963&dopt=GenPept" >emb|CAB78304.1|</a> (AL161534) putative protein [Arabidopsis thaliana]
Length = 649
Score = 179 bits (454), Expect = 2e-44
Identities = 85/136 (62%), Positives = 102/136 (74%)
Frame = +3
Query: 168 LVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRAN 347
L L +C GCGS SDLYG+SC+H TLC CG++MA + ++C C +T LIREYNVRA
Sbjct: 5 LQLNTSCVGCGSQSDLYGSSCRHMTLCLKCGRTMAQNKSKCHECGTVVTRLIREYNVRAA 64
Query: 348 ATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWILEDET 527
A TDK++ IGRFVTGLP F KK +ENKWSL K+ QGRQ + REK KPWILEDET
Sbjct: 65 APTDKNYFIGRFVTGLPNF--KKGSENKWSLRKDIPQGRQFTDAQREKLKNKPWILEDET 122
Query: 528 GQYQYQGQMEGSQSST 575
GQ+QYQG +EGSQS+T
Sbjct: 123 GQFQYQGHLEGSQSAT 138
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="6862918" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 6862918></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=06862918&dopt=GenPept" >gb|AAF30307.1|AC018907_7</a> (AC018907) putative RING zinc finger protein [Arabidopsis thaliana]
Length = 546
Score = 38.1 bits (87), Expect = 0.067
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = +3
Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323
C+H +CS C K + L S +C +C PI L+
Sbjct: 504 CRHLCMCSDCAKELRLQSNKCPICRQPIEELL 535
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="18397483" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 18397483></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=18397483&dopt=GenPept" >ref|NP_566274.1|</a> (NM_111489) putative RING zinc finger protein; protein id:
At3g06140.1, supported by cDNA: 40787. [Arabidopsis
thaliana]
<a name = 21593638></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21593638&dopt=GenPept" >gb|AAM65605.1|</a> (AY088059) putative RING zinc finger protein [Arabidopsis thaliana]
Length = 359
Score = 38.1 bits (87), Expect = 0.067
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = +3
Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323
C+H +CS C K + L S +C +C PI L+
Sbjct: 317 CRHLCMCSDCAKELRLQSNKCPICRQPIEELL 348
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="21928149" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 21928149></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21928149&dopt=GenPept" >gb|AAM78102.1|</a> (AY125510) AT5g19080/T16G12_120 [Arabidopsis thaliana]
Length = 378
Score = 38.1 bits (87), Expect = 0.067
Identities = 13/41 (31%), Positives = 22/41 (52%)
Frame = +3
Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIR 326
P D C+H +LCS C + + + +C +C PI L++
Sbjct: 328 PKDTAVMPCRHLSLCSDCAEELRFQTNKCPICRQPIHELVK 368
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="18398633" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 18398633></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=18398633&dopt=GenPept" >ref|NP_566356.1|</a> (NM_111812) expressed protein; protein id: At3g09770.1, supported
by cDNA: 38757., supported by cDNA: gi_18377643
[Arabidopsis thaliana]
<a name = 6681341></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=06681341&dopt=GenPept" >gb|AAF23258.1|AC015985_16</a> (AC015985) putative RING zinc finger protein [Arabidopsis thaliana]
<a name = 6682260></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=06682260&dopt=GenPept" >gb|AAF23312.1|AC016661_37</a> (AC016661) unknown protein [Arabidopsis thaliana]
<a name = 18377644></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=18377644&dopt=GenPept" >gb|AAL66972.1|</a> (AY074275) putative RING zinc finger protein [Arabidopsis thaliana]
<a name = 21593417></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21593417&dopt=GenPept" >gb|AAM65384.1|</a> (AY087831) putative RING zinc finger protein [Arabidopsis thaliana]
Length = 388
Score = 37.7 bits (86), Expect = 0.087
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRAN 347
P D C+H +CS C K + + RC +C P+ L+ E V N
Sbjct: 326 PRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLL-EIKVHGN 372
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="15239642" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 15239642></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15239642&dopt=GenPept" >ref|NP_197409.1|</a> (NM_121913) unknown protein; protein id: At5g19080.1 [Arabidopsis
thaliana]
Length = 378
Score = 37.4 bits (85), Expect = 0.11
Identities = 13/41 (31%), Positives = 21/41 (50%)
Frame = +3
Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIR 326
P D C+H LCS C + + + +C +C PI L++
Sbjct: 328 PKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQPIHELVK 368
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="17551576" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 17551576></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=17551576&dopt=GenPept" >ref|NP_510817.1|</a> (NM_078416) F10D7.5b.p [Caenorhabditis elegans]
Length = 750
Score = 36.6 bits (83), Expect = 0.19
Identities = 11/36 (30%), Positives = 21/36 (57%)
Frame = +3
Query: 225 SCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332
+C H +C CG+ + + C +C AP+ ++I+ Y
Sbjct: 713 TCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTY 748
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="19225030" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 19225030></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=19225030&dopt=GenPept" >gb|AAL86506.1|AC099040_10</a> (AC099040) putative hydroxyproline-rich glycoprotein [Oryza sativa
(japonica cultivar-group)]
<a name = 20279471></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=20279471&dopt=GenPept" >gb|AAM18751.1|AC099325_7</a> (AC099325) unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 425
Score = 36.6 bits (83), Expect = 0.19
Identities = 13/40 (32%), Positives = 20/40 (49%)
Frame = +3
Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323
P D C+H +CS C K + + RC +C P+ L+
Sbjct: 350 PRDTTVLPCRHMCMCSECAKVLRYQTNRCPICRQPVERLL 389
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="21913050" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 21913050></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21913050&dopt=GenPept" >gb|AAM81093.1|U40945_8</a> (U40945) Hypothetical protein F10D7.5d [Caenorhabditis elegans]
Length = 465
Score = 36.6 bits (83), Expect = 0.19
Identities = 11/36 (30%), Positives = 21/36 (57%)
Frame = +3
Query: 225 SCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332
+C H +C CG+ + + C +C AP+ ++I+ Y
Sbjct: 428 TCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTY 463
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="17551578" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 17551578></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=17551578&dopt=GenPept" >ref|NP_510818.1|</a> (NM_078417) D. melanogaster finger protein neuralized
[Caenorhabditis elegans]
Length = 795
Score = 36.6 bits (83), Expect = 0.19
Identities = 11/36 (30%), Positives = 21/36 (57%)
Frame = +3
Query: 225 SCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332
+C H +C CG+ + + C +C AP+ ++I+ Y
Sbjct: 758 TCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTY 793
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="21913047" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 21913047></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21913047&dopt=GenPept" >gb|AAM81090.1|U40945_5</a> (U40945) Hypothetical protein F10D7.5a [Caenorhabditis elegans]
Length = 634
Score = 36.6 bits (83), Expect = 0.19
Identities = 11/36 (30%), Positives = 21/36 (57%)
Frame = +3
Query: 225 SCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332
+C H +C CG+ + + C +C AP+ ++I+ Y
Sbjct: 597 TCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTY 632
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="7498826" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 7498826></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=07498826&dopt=GenPept" >pir||T16028</a> hypothetical protein F10D7.5 - Caenorhabditis elegans
Length = 824
Score = 36.6 bits (83), Expect = 0.19
Identities = 11/36 (30%), Positives = 21/36 (57%)
Frame = +3
Query: 225 SCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332
+C H +C CG+ + + C +C AP+ ++I+ Y
Sbjct: 787 TCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTY 822
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="15240979" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 15240979></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15240979&dopt=GenPept" >ref|NP_195765.1|</a> (NM_120223) putative protein; protein id: At5g01450.1 [Arabidopsis
thaliana]
<a name = 11357966></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=11357966&dopt=GenPept" >pir||T48167</a> hypothetical protein T10O8.160 - Arabidopsis thaliana
<a name = 7320723></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=07320723&dopt=GenPept" >emb|CAB81928.1|</a> (AL161746) putative protein [Arabidopsis thaliana]
Length = 428
Score = 36.2 bits (82), Expect = 0.25
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 150 AMGSADLVLKAACEGC-GSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIR 326
A G + C C +P D + SC H C CG +A +S C VC I + +
Sbjct: 365 AHGEGHSSTRYLCAICYDAPRDCFFLSCGHCVACFQCGTRIAETSGFCPVCRKKIRKVKK 424
Query: 327 EYNV 338
+NV
Sbjct: 425 IFNV 428
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="7292914" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 7292914></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=07292914&dopt=GenPept" >gb|AAF48305.1|</a> (AE003493) CG9941-PA [Drosophila melanogaster]
Length = 789
Score = 35.4 bits (80), Expect = 0.43
Identities = 14/43 (32%), Positives = 23/43 (52%)
Frame = +3
Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRANATT 356
C+H LC+SC S+ + C +C AP L++ V+ +T
Sbjct: 334 CRHLCLCNSCADSLRYQANNCPICRAPFRALLQIRAVQKGIST 376
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="21618140" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 21618140></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21618140&dopt=GenPept" >gb|AAM67190.1|</a> (AY088884) putative RING zinc finger protein [Arabidopsis thaliana]
Length = 337
Score = 35.4 bits (80), Expect = 0.43
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 186 CEGCGS-PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323
C C S P D C+H +CS C K++ + C VC P+ L+
Sbjct: 285 CVVCLSEPRDTTVLPCRHMCMCSGCAKALRFQTNLCPVCRQPVEMLL 331
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="15242675" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 15242675></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15242675&dopt=GenPept" >ref|NP_195940.1|</a> (NM_120398) expressed protein; protein id: At5g03200.1, supported
by cDNA: 98672. [Arabidopsis thaliana]
<a name = 11357455></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=11357455&dopt=GenPept" >pir||T48341</a> hypothetical protein F15A17.230 - Arabidopsis thaliana
<a name = 7413597></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=07413597&dopt=GenPept" >emb|CAB86087.1|</a> (AL163002) putative protein [Arabidopsis thaliana]
<a name = 9757771></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=09757771&dopt=GenPept" >dbj|BAB08380.1|</a> (AB005240) RING zinc finger protein-like [Arabidopsis thaliana]
Length = 337
Score = 35.4 bits (80), Expect = 0.43
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 186 CEGCGS-PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323
C C S P D C+H +CS C K++ + C VC P+ L+
Sbjct: 285 CVVCLSEPRDTTVLPCRHMCMCSGCAKALRFQTNLCPVCRQPVEMLL 331
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="17545794" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 17545794></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=17545794&dopt=GenPept" >ref|NP_519196.1|</a> (NC_003295) PROBABLE TWO-COMPONENT SYSTEM SENSOR HISTIDINE KINASE
TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
<a name = 17428088></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=17428088&dopt=GenPept" >emb|CAD14777.1|</a> (AL646062) PROBABLE TWO-COMPONENT SYSTEM SENSOR HISTIDINE KINASE
TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
Length = 784
Score = 34.7 bits (78), Expect = 0.74
Identities = 21/43 (48%), Positives = 25/43 (57%)
Frame = +2
Query: 167 PGAEGGVRGLRLAVGPLRHVMQAHHALQLLRQIHGALQRPLPR 295
P + VRGL LA GP H++ H ALQL RQ AL +PR
Sbjct: 173 PDPDSVVRGLYLAEGPRGHLLD-HLALQLARQAGPALAGDVPR 214
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="21292673" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 21292673></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21292673&dopt=GenPept" >gb|EAA04818.1|</a> (AAAB01008810) agCP6745 [Anopheles gambiae str. PEST]
Length = 307
Score = 34.7 bits (78), Expect = 0.74
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLIR 326
C+H LC+SC S+ + C +C AP L++
Sbjct: 246 CRHLCLCNSCADSLRYQANNCPICRAPFRALLQ 278
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="22999586" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 22999586></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=22999586&dopt=GenPept" >gb|ZP_00043559.1|</a> (NZ_AAAN01000154) hypothetical protein [Magnetococcus sp. MC-1]
Length = 487
Score = 34.7 bits (78), Expect = 0.74
Identities = 21/62 (33%), Positives = 30/62 (47%), Gaps = 1/62 (1%)
Frame = +3
Query: 150 AMGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVC-SAPITNLIR 326
AM D ++ C CG+ D YG SC+ +CS+ + L A+C VC S P+
Sbjct: 130 AMFLPDRFIRGTCPHCGAV-DQYGDSCE---VCSATYRPTELKEAKCAVCGSQPVEKSSE 185
Query: 327 EY 332
Y
Sbjct: 186 HY 187
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="15241556" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 15241556></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15241556&dopt=GenPept" >ref|NP_199282.1|</a> (NM_123836) putative protein; protein id: At5g44690.1 [Arabidopsis
thaliana]
<a name = 9758373></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=09758373&dopt=GenPept" >dbj|BAB08822.1|</a> (AB016874) gene_id:K23L20.2~pir||T00474~similar to unknown protein
[Arabidopsis thaliana]
Length = 684
Score = 34.7 bits (78), Expect = 0.74
Identities = 16/54 (29%), Positives = 25/54 (45%), Gaps = 1/54 (1%)
Frame = +3
Query: 174 LKAACEGCGS-PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332
L+ C C P D C H C C + S+ +C +C API +++R +
Sbjct: 628 LERNCSICFEMPIDSLLYRCGHMCTCLKCAHELQWSNMKCPICMAPIVDVVRAF 681
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="15231808" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 15231808></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15231808&dopt=GenPept" >ref|NP_190909.1|</a> (NM_115201) putative protein; protein id: At3g53410.1, supported by
cDNA: 110247. [Arabidopsis thaliana]
<a name = 11357789></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=11357789&dopt=GenPept" >pir||T45881</a> hypothetical protein F4P12.110 - Arabidopsis thaliana
<a name = 6729492></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=06729492&dopt=GenPept" >emb|CAB67648.1|</a> (AL132966) putative protein [Arabidopsis thaliana]
<a name = 21536752></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21536752&dopt=GenPept" >gb|AAM61084.1|</a> (AY084516) putative RING zinc finger protein [Arabidopsis thaliana]
Length = 299
Score = 34.3 bits (77), Expect = 0.96
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323
P D C+H +CS C K + + C +C P+ L+
Sbjct: 250 PRDTTVLPCRHMCMCSGCAKLLRFQTNLCPICRQPVDRLL 289
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="3043612" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 3043612></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=03043612&dopt=GenPept" >dbj|BAA25470.1|</a> (AB011116) KIAA0544 protein [Homo sapiens]
Length = 583
Score = 33.9 bits (76), Expect = 1.3
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +3
Query: 207 SDLYGT---SCKHTTLCSSCGKSMALSSARCLVCSAPITNL--IREYNVRANATTDKSFS 371
SDL T C+H LC+SC ++ + C +C P L IR + A + SFS
Sbjct: 314 SDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFS 373
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="17550346" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 17550346></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=17550346&dopt=GenPept" >ref|NP_510385.1|</a> (NM_077984) Zinc finger, C3HC4 type (RING finger) [Caenorhabditis
elegans]
<a name = 7495870></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=07495870&dopt=GenPept" >pir||T19204</a> hypothetical protein C11H1.3 - Caenorhabditis elegans
<a name = 3874246></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=03874246&dopt=GenPept" >emb|CAA94116.1|</a> (Z70205) predicted using Genefinder~contains similarity to Pfam
domain: PF00097 (Zinc finger, C3HC4 type (RING finger)),
Score=29.8, E-value=2.2e-08, N=1~cDNA EST yk67c6.5 comes
from this gene~cDNA EST yk597f9.5 comes from this
gene~cDNA EST yk653f11.5>
Length = 529
Score = 33.9 bits (76), Expect = 1.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLIR 326
C+H +CS+C S+ C +C +P LIR
Sbjct: 284 CRHLCVCSNCADSLRYKHNNCPICRSPFRALIR 316
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="21356667" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 21356667></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21356667&dopt=GenPept" >ref|NP_649187.1|</a> (NM_140930) CG7298 gene product [Drosophila melanogaster]
<a name = 16769330></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=16769330&dopt=GenPept" >gb|AAL28884.1|</a> (AY061336) LD26327p [Drosophila melanogaster]
Length = 369
Score = 33.5 bits (75), Expect = 1.6
Identities = 26/87 (29%), Positives = 37/87 (41%), Gaps = 2/87 (2%)
Frame = +3
Query: 144 SPAMGSADLVLKAACEGCGSPSDLYGT--SCKHTTLCSSCGKSMALSSARCLVCSAPITN 317
S G+ + VL++ C+ P +G SC C S + L S +C N
Sbjct: 144 SNTQGTNETVLESLCDVV-PPGQYFGDTESCSTWHYCESTSTGLVLQSGKCSA------N 196
Query: 318 LIREYNVRANATTDKSFSIGRFVTGLP 398
YNV AN T +S S+ VT +P
Sbjct: 197 NQTAYNVLANQCTYESASVCSRVTNIP 223
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="23093055" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 23093055></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=23093055&dopt=GenPept" >gb|AAF49059.2|</a> (AE003514) CG7298-PA [Drosophila melanogaster]
Length = 356
Score = 33.5 bits (75), Expect = 1.6
Identities = 26/87 (29%), Positives = 37/87 (41%), Gaps = 2/87 (2%)
Frame = +3
Query: 144 SPAMGSADLVLKAACEGCGSPSDLYGT--SCKHTTLCSSCGKSMALSSARCLVCSAPITN 317
S G+ + VL++ C+ P +G SC C S + L S +C N
Sbjct: 131 SNTQGTNETVLESLCDVV-PPGQYFGDTESCSTWHYCESTSTGLVLQSGKCSA------N 183
Query: 318 LIREYNVRANATTDKSFSIGRFVTGLP 398
YNV AN T +S S+ VT +P
Sbjct: 184 NQTAYNVLANQCTYESASVCSRVTNIP 210
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="20891615" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 20891615></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=20891615&dopt=GenPept" >ref|XP_148077.1|</a> (XM_148077) RIKEN cDNA 2610042J20 [Mus musculus]
Length = 578
Score = 33.5 bits (75), Expect = 1.6
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +3
Query: 207 SDLYGT---SCKHTTLCSSCGKSMALSSARCLVCSAPITNL--IREYNVRANATTDKSFS 371
SDL T C+H LC+SC ++ + C +C P L IR + A + SFS
Sbjct: 283 SDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPISFS 342
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="23002453" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 23002453></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=23002453&dopt=GenPept" >gb|ZP_00046129.1|</a> (NZ_AAAB01000003) hypothetical protein [Lactobacillus gasseri]
Length = 281
Score = 33.5 bits (75), Expect = 1.6
Identities = 24/95 (25%), Positives = 40/95 (41%)
Frame = +3
Query: 246 CSSCGKSMALSSARCLVCSAPITNLIREYNVRANATTDKSFSIGRFVTGLPPFSKKKSAE 425
C +CGK + L A+C C N N+ A D +G + +P KK E
Sbjct: 5 CPNCGKEVNLGEAKCPFCGYDFVN-----NINAKIPADLGM-MGIRLNNVPKKKKKAEPE 58
Query: 426 NKWSLHKEGLQGRQIPENMREKYNRKPWILEDETG 530
NK + K Q + + K+ +K +++ + G
Sbjct: 59 NK-RVEKNTTQKVAVTKAKELKHAKKNKVVKKKKG 92
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="12848068" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 12848068></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=12848068&dopt=GenPept" >dbj|BAB27816.1|</a> (AK011747) Zinc finger, C3HC4 type (RING finger) containing
protein~data source:Pfam, source key:PF00097,
evidence:ISS~putative [Mus musculus]
Length = 494
Score = 33.5 bits (75), Expect = 1.6
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +3
Query: 207 SDLYGT---SCKHTTLCSSCGKSMALSSARCLVCSAPITNL--IREYNVRANATTDKSFS 371
SDL T C+H LC+SC ++ + C +C P L IR + A + SFS
Sbjct: 245 SDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPISFS 304
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="18403707" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 18403707></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=18403707&dopt=GenPept" >ref|NP_566724.1|</a> (NM_113229) auxin-regulated protein; protein id: At3g23280.1,
supported by cDNA: 41648. [Arabidopsis thaliana]
Length = 462
Score = 33.1 bits (74), Expect = 2.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 201 SPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338
+PS+ C H C SC K + + C VC A I +I+ Y V
Sbjct: 417 APSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 462
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="21593715" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 21593715></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21593715&dopt=GenPept" >gb|AAM65682.1|</a> (AY088137) unknown [Arabidopsis thaliana]
Length = 462
Score = 33.1 bits (74), Expect = 2.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 201 SPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338
+PS+ C H C SC K + + C VC A I +I+ Y V
Sbjct: 417 APSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 462
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="7939538" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 7939538></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=07939538&dopt=GenPept" >dbj|BAA95741.1|</a> (AB025608) contains similarity to ankyrin like
protein~gene_id:K14B15.19 [Arabidopsis thaliana]
Length = 454
Score = 33.1 bits (74), Expect = 2.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 201 SPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338
+PS+ C H C SC K + + C VC A I +I+ Y V
Sbjct: 409 APSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 454
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="15242304" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 15242304></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15242304&dopt=GenPept" >ref|NP_199323.1|</a> (NM_123878) putative protein; protein id: At5g45100.1, supported by
cDNA: gi_16604441 [Arabidopsis thaliana]
<a name = 9758985></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=09758985&dopt=GenPept" >dbj|BAB09495.1|</a> (AB019224) gene_id:K17O22.9~pir||T04751~strong similarity to
unknown protein [Arabidopsis thaliana]
<a name = 16604442></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=16604442&dopt=GenPept" >gb|AAL24227.1|</a> (AY058839) AT5g45100/K17O22_9 [Arabidopsis thaliana]
Length = 294
Score = 33.1 bits (74), Expect = 2.1
Identities = 17/54 (31%), Positives = 25/54 (45%), Gaps = 1/54 (1%)
Frame = +3
Query: 156 GSADLVLKAACEGCGS-PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPIT 314
G V+ C+ CG + + C+H LC+ CG S L + C VC +T
Sbjct: 234 GDVTAVVNGGCKRCGELTASVLVLPCRHLCLCTVCGSSALLRT--CPVCDMVMT 285
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="22331278" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 22331278></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=22331278&dopt=GenPept" >ref|NP_683586.1|</a> (NM_148744) auxin-regulated protein; protein id: At3g23280.2,
supported by cDNA: gi_15010671, supported by cDNA:
gi_16974316 [Arabidopsis thaliana]
<a name = 15010672></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15010672&dopt=GenPept" >gb|AAK73995.1|</a> (AY045637) AT3g23280/K14B15_17 [Arabidopsis thaliana]
<a name = 16974317></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=16974317&dopt=GenPept" >gb|AAL31143.1|</a> (AY059650) AT3g23280/K14B15_17 [Arabidopsis thaliana]
Length = 438
Score = 33.1 bits (74), Expect = 2.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 201 SPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338
+PS+ C H C SC K + + C VC A I +I+ Y V
Sbjct: 393 APSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 438
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="18414200" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 18414200></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=18414200&dopt=GenPept" >ref|NP_567428.1|</a> (NM_117514) Expressed protein; protein id: At4g14365.1, supported
by cDNA: 37809., supported by cDNA: gi_13358233,
supported by cDNA: gi_17065423, supported by cDNA:
gi_20148546 [Arabidopsis thaliana]
<a name = 11762236></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=11762236&dopt=GenPept" >gb|AAG40396.1|AF325044_1</a> (AF325044) AT4g14360 [Arabidopsis thaliana]
<a name = 17065424></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=17065424&dopt=GenPept" >gb|AAL32866.1|</a> (AY062788) ankyrin homolog [Arabidopsis thaliana]
<a name = 20148547></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=20148547&dopt=GenPept" >gb|AAM10164.1|</a> (AY081602) ankyrin homolog [Arabidopsis thaliana]
Length = 376
Score = 32.7 bits (73), Expect = 2.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 201 SPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338
+PS+ C H C SC K + C VC A I +I+ Y+V
Sbjct: 331 APSEAVCVPCGHVAGCISCLKEIENKKMGCPVCRANIDQVIKLYHV 376
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="15387746" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 15387746></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15387746&dopt=GenPept" >emb|CAC59873.1|</a> (AL160371) probable heat shock protein hslu [Leishmania major]
Length = 288
Score = 32.7 bits (73), Expect = 2.8
Identities = 29/120 (24%), Positives = 48/120 (39%), Gaps = 2/120 (1%)
Frame = +3
Query: 177 KAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRANATT 356
+A C S G + HT L S A ++A +AP+TN + +R
Sbjct: 3 RALSLSCRSSVAATGAASSHTLLTGVRCCSTAAAAAAAPAPAAPLTNPGSKTLIRDMRPR 62
Query: 357 DKSFSIGRFVTGLPPFSKKKSA--ENKWSLHKEGLQGRQIPENMREKYNRKPWILEDETG 530
+ + R++ G K S N+W H Q+P ++RE+ K ++ TG
Sbjct: 63 ELMKELDRYIVGQSEAKKAVSVALRNRWRRH-------QVPSDIREEIAPKNILMIGPTG 115
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="14587218" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 14587218></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=14587218&dopt=GenPept" >dbj|BAB61152.1|</a> (AP003199) contains ESTs AU068079(C11823),AU068080(C11823)~similar
to Arabidopsis thaliana chromosome 3, F4P12.110~unknown
protein [Oryza sativa (japonica cultivar-group)]
Length = 313
Score = 32.7 bits (73), Expect = 2.8
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
Frame = +3
Query: 186 CEGCGS-PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338
C C S P D C+H LC C + + + +C +C P+ L RE V
Sbjct: 246 CVVCLSEPRDTAVLPCRHMCLCRECAQVLKYQTNKCPICRQPVEGL-REIEV 296
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="15224462" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 15224462></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15224462&dopt=GenPept" >ref|NP_181354.1|</a> (NM_129376) unknown protein; protein id: At2g38190.1 [Arabidopsis
thaliana]
<a name = 7485584></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=07485584&dopt=GenPept" >pir||T01251</a> hypothetical protein F16M14.12 - Arabidopsis thaliana
<a name = 3335367></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=03335367&dopt=GenPept" >gb|AAC27168.1|</a> (AC003028) unknown protein [Arabidopsis thaliana]
Length = 124
Score = 32.3 bits (72), Expect = 3.7
Identities = 13/45 (28%), Positives = 20/45 (43%)
Frame = +3
Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338
P D + C H+ C CG +M + C +C + + R Y V
Sbjct: 80 PRDCFFLPCGHSVSCYECGTTMQEADGSCPICRRKMKKVKRIYTV 124
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="22296435" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 22296435></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=22296435&dopt=GenPept" >dbj|BAC10202.1|</a> (AP004395) contains ESTs
AU055804(S20063),AU055998(S20213),
AU055803(S20063)~similar to ankyrin homolog [Oryza
sativa (japonica cultivar-group)]
Length = 489
Score = 32.0 bits (71), Expect = 4.8
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = +3
Query: 156 GSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYN 335
G+ + L A EG P C H C SC K + C +C A I +IR Y
Sbjct: 436 GTCVICLDAPVEGACIP-------CGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLYA 488
Query: 336 V 338
V
Sbjct: 489 V 489
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="19922258" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 19922258></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=19922258&dopt=GenPept" >ref|NP_610973.1|</a> (NM_137129) CG12863 gene product [Drosophila melanogaster]
<a name = 17945550></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=17945550&dopt=GenPept" >gb|AAL48827.1|</a> (AY071205) RE24565p [Drosophila melanogaster]
Length = 184
Score = 32.0 bits (71), Expect = 4.8
Identities = 27/116 (23%), Positives = 43/116 (36%)
Frame = +3
Query: 186 CEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRANATTDKS 365
C CG + G + KH C +C K + + C C+ + Y + +
Sbjct: 69 CNRCGKCPSVNGQTYKHCESCDACVKPNYVHCSDCRRCTQKEGHNCSFYQTKQHCW--MC 126
Query: 366 FSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWILEDETGQ 533
G T P F K+K+ K L R+ + R KY R+ + + T Q
Sbjct: 127 GQKGHIETKCPNFRKRKTNYTKGCLLCGKRNHREKRCSYRSKYFREQCFMNETTIQ 182
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="21627199" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 21627199></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21627199&dopt=GenPept" >gb|AAF58228.2|</a> (AE003814) CG12863-PA [Drosophila melanogaster]
Length = 425
Score = 32.0 bits (71), Expect = 4.8
Identities = 27/116 (23%), Positives = 43/116 (36%)
Frame = +3
Query: 186 CEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRANATTDKS 365
C CG + G + KH C +C K + + C C+ + Y + +
Sbjct: 310 CNRCGKCPSVNGQTYKHCESCDACVKPNYVHCSDCRRCTQKEGHNCSFYQTKQHCW--MC 367
Query: 366 FSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWILEDETGQ 533
G T P F K+K+ K L R+ + R KY R+ + + T Q
Sbjct: 368 GQKGHIETKCPNFRKRKTNYTKGCLLCGKRNHREKRCSYRSKYFREQCFMNETTIQ 423
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="15128197" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 15128197></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15128197&dopt=GenPept" >gb|AAK84420.1|AF400063_1</a> (AF400063) neuralized 1 [Mus musculus]
Length = 574
Score = 31.6 bits (70), Expect = 6.2
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%)
Frame = +3
Query: 225 SCKHTTLCSSCGKSMALS-SARCLVCSAPITNLIREY 332
+C H LC SCG + + A C +C PI ++I+ Y
Sbjct: 535 TCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTY 571
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="10946688" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 10946688></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=10946688&dopt=GenPept" >ref|NP_067335.1|</a> (NM_021360) neuralized homolog (Drosophila) [Mus musculus]
<a name = 6688679></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=06688679&dopt=GenPept" >emb|CAB65238.1|</a> (Y15160) neuralized-like protein [Mus musculus]
Length = 574
Score = 31.6 bits (70), Expect = 6.2
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%)
Frame = +3
Query: 225 SCKHTTLCSSCGKSMALS-SARCLVCSAPITNLIREY 332
+C H LC SCG + + A C +C PI ++I+ Y
Sbjct: 535 TCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTY 571
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="15226959" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 15226959></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15226959&dopt=GenPept" >ref|NP_181076.1|</a> (NM_129085) unknown protein; protein id: At2g35330.1 [Arabidopsis
thaliana]
<a name = 3608154></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=03608154&dopt=GenPept" >gb|AAC36187.1|</a> (AC005314) unknown protein [Arabidopsis thaliana]
Length = 711
Score = 31.6 bits (70), Expect = 6.2
Identities = 14/36 (38%), Positives = 18/36 (49%), Gaps = 1/36 (2%)
Frame = +3
Query: 228 CKHTTLCSSCGKS-MALSSARCLVCSAPITNLIREY 332
C H +C+SC S M A C C AP+ IR +
Sbjct: 672 CAHQVVCASCSDSFMGSGKATCPCCRAPVQQRIRVF 707
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="17231254" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 17231254></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=17231254&dopt=GenPept" >ref|NP_487802.1|</a> (NC_003272) oligopeptide binding protein of ABC transporter [Nostoc
sp. PCC 7120]
<a name = 17132896></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=17132896&dopt=GenPept" >dbj|BAB75461.1|</a> (AP003594) oligopeptide binding protein of ABC transporter [Nostoc
sp. PCC 7120]
Length = 588
Score = 31.6 bits (70), Expect = 6.2
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Frame = +3
Query: 333 NVRANATTDKSFSIGRFVTGLPPFSKK---KSAENKWSLHKEGLQGRQIPENMREKYN 497
N ATT ++ + + V + ++ K +S WSL GL G IP ++ EK+N
Sbjct: 143 NPAVGATTSANYEVVKSVEAIDDYTVKVNFQSPNPAWSLPFVGLNGMIIPRHIFEKFN 200
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="15320749" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 15320749></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15320749&dopt=GenPept" >ref|NP_203261.1|</a> (NC_003083) IAP-4 [Epiphyas postvittana nucleopolyhedrovirus]
<a name = 4378822></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=04378822&dopt=GenPept" >gb|AAD19699.1|</a> (AF119228) apoptosis inhibitor iap-4 [Epiphyas postvittana
nucleopolyhedrovirus]
<a name = 15213217></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15213217&dopt=GenPept" >gb|AAK85656.1|</a> (AY043265) IAP-4 [Epiphyas postvittana nucleopolyhedrovirus]
Length = 141
Score = 31.6 bits (70), Expect = 6.2
Identities = 14/36 (38%), Positives = 21/36 (57%)
Frame = +3
Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYN 335
C H TLC+ C S+ + CL+C P+T + +YN
Sbjct: 106 CGHYTLCTVC--SVQMCGKPCLLCQMPVTEYV-DYN 138
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="22531056" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 22531056></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=22531056&dopt=GenPept" >gb|AAM97032.1|</a> (AY136366) unknown protein [Arabidopsis thaliana]
Length = 738
Score = 31.6 bits (70), Expect = 6.2
Identities = 14/36 (38%), Positives = 18/36 (49%), Gaps = 1/36 (2%)
Frame = +3
Query: 228 CKHTTLCSSCGKS-MALSSARCLVCSAPITNLIREY 332
C H +C+SC S M A C C AP+ IR +
Sbjct: 699 CAHQVVCASCSDSFMGSGKATCPCCRAPVQQRIRVF 734
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="20890044" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 20890044></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=20890044&dopt=GenPept" >ref|XP_123433.1|</a> (XM_123433) similar to neuralized homolog (Drosophila) [Mus
musculus]
Length = 499
Score = 31.6 bits (70), Expect = 6.2
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%)
Frame = +3
Query: 225 SCKHTTLCSSCGKSMALS-SARCLVCSAPITNLIREY 332
+C H LC SCG + + A C +C PI ++I+ Y
Sbjct: 460 TCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTY 496
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="15420883" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 15420883></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=15420883&dopt=GenPept" >gb|AAK97495.1|AF401228_1</a> (AF401228) neuralized [Mus musculus]
Length = 557
Score = 31.6 bits (70), Expect = 6.2
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%)
Frame = +3
Query: 225 SCKHTTLCSSCGKSMALS-SARCLVCSAPITNLIREY 332
+C H LC SCG + + A C +C PI ++I+ Y
Sbjct: 518 TCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTY 554
</PRE>
<PRE>
<input type="checkbox" name="getSeqGi" value="18590406" onClick="synchronizeCheck(this.value, 'getSeqAlignment', 'getSeqGi', this.checked)">><a name = 18590406></a><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=18590406&dopt=GenPept" >ref|XP_085974.1|</a> (XM_085974) similar to zinc finger protein [Homo sapiens]
Length = 241
Score = 31.6 bits (70), Expect = 6.2
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Frame = +3
Query: 186 CEGCGSPSDLYGTSCKHTTL--------CSSCGKSMALSS---ARCLVCS 302
C CG + T C+H + CS CGKS + SS C +C+
Sbjct: 187 CHACGKAFNTSSTLCQHNRIHTGEKPFQCSQCGKSFSCSSHLTRHCRMCN 236
</PRE>
</form>
<table border="0"><tr><td><FORM method="post" action="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?SUBMIT=y" name="submitterBottom"><input type=button value="Get selected sequences" onClick="finalSubmit(0, 'getSeqAlignment', 'getSeqGi', 'submitterBottom')"><input type="hidden" name="db" value=""><input type="hidden" name="term" value=""><input type="hidden" name="doptcmdl" value="docsum"><input type="hidden" name="cmd" value="search"></form></td><td><FORM><input type="button" value="Select all" onClick="handleCheckAll('select', 'getSeqAlignment', 'getSeqGi')"></form></td><td><FORM><input type="button" value="Deselect all" onClick="handleCheckAll('deselect', 'getSeqAlignment', 'getSeqGi')"></form></td></tr></table><form>
<PRE>
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Sep 19, 2002 1:01 AM
Number of letters in database: 370,891,306
Number of sequences in database: 1,171,253
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 342,546,019
Number of Sequences: 1171253
Number of extensions: 6751909
Number of successful extensions: 24973
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 23403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24941
length of database: 370,891,306
effective HSP length: 115
effective length of database: 236,197,211
effective search space used: 17950988036
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
</form>
|
