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BLASTP 2.2.8 [Jan-05-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16130963|ref|NP_417539.1| RNA polymerase sigma(70)
[Escherichia coli K12]
(613 letters)
Database: NC_000913
4311 sequences; 1,350,842 total letters
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
gi|16130963|ref|NP_417539.1| RNA polymerase sigma(70) [Escherich... 1032 0.0
gi|16130648|ref|NP_417221.1| sigma S factor [Escherichia coli K12] 189 3e-049
gi|16131333|ref|NP_417918.1| sigma(32) factor [Escherichia coli ... 84 2e-017
gi|33347603|ref|NP_416432.2| sigma factor 28 [Escherichia coli K12] 63 5e-011
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
gi|16130963|ref|NP_417539.1| RNA polymerase sigma(70) [Escherich... 1016 0.0
gi|16130648|ref|NP_417221.1| sigma S factor [Escherichia coli K12] 358 e-100
gi|16131333|ref|NP_417918.1| sigma(32) factor [Escherichia coli ... 290 2e-079
gi|33347603|ref|NP_416432.2| sigma factor 28 [Escherichia coli K12] 237 2e-063
Sequences not found previously or not previously below threshold:
CONVERGED!
Database: NC_000913
Posted date: Apr 8, 2004 12:56 AM
Number of letters in database: 1,350,842
Number of sequences in database: 4311
Lambda K H
0.313 0.141 0.379
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,949,500
Number of Sequences: 4311
Number of extensions: 123966
Number of successful extensions: 504
Number of sequences better than 1.0: 6
Number of HSP's better than 1.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 445
Number of HSP's gapped (non-prelim): 23
length of query: 613
length of database: 1,350,842
effective HSP length: 90
effective length of query: 523
effective length of database: 962,852
effective search space: 503571596
effective search space used: 503571596
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 64 (29.2 bits)
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