1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
|
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
<!-- saved from url=(0062)http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/gene/405967 -->
<HTML><HEAD><TITLE>Gene Allo.macr:orf242:mt:405967</TITLE>
<META content="text/html; charset=windows-1252" http-equiv=Content-Type><!-- HTML wrapper added by postprocessing genera's HTML output --><!-- Produced by sybgw 6.0 by Pierre Rioux, OGMP/GOBASE --><!-- Based on Stanley Letovsky's "sybgw" bourne shell script --><!-- Report bugs to riouxp@bch.umontreal.ca -->
<META content="MSHTML 5.00.2014.210" name=GENERATOR></HEAD>
<BODY>
<HR>
<H1>
<CENTER>Gene Query Result </CENTER></H1>
<HR>
<!-- Menu bar added dynamically by --><!-- + sybgw (result pages), --><!-- + godl (download pages) or --><!-- + mkgoforms (query forms) -->
<CENTER>Other queries: [ <A
href="http://alice.bch.umontreal.ca/genera/gobase/sequence.html">Sequence</A> |
<A href="http://alice.bch.umontreal.ca/genera/gobase/gene.html">Gene</A> | <A
href="http://alice.bch.umontreal.ca/genera/gobase/protein.html">Protein</A> | <A
href="http://alice.bch.umontreal.ca/genera/gobase/RNA.html">RNA</A> | <A
href="http://alice.bch.umontreal.ca/genera/gobase/exon.html">Exon</A> | <A
href="http://alice.bch.umontreal.ca/genera/gobase/intron.html">Intron</A> | <A
href="http://alice.bch.umontreal.ca/genera/gobase/GeneProductClass.html">Genes&Products</A>
| <A href="http://alice.bch.umontreal.ca/genera/gobase/map.html">Map</A> | <A
href="http://alice.bch.umontreal.ca/genera/gobase/taxon.html">Taxon</A> | <A
href="http://alice.bch.umontreal.ca/genera/gobase/gobase.html">Main</A> ]
</CENTER><!--
NOTICE: This is the 02-Apr-1998 <B>beta release</B> of GOBASE, still in testing.
-->
<P><!-- End of menu bar --><!-- Genera's output starts here (some substitutions may have been applied) -->
<H1>Gene Allo.macr:orf242:mt:405967</H1>
<UL>
<LI><B>Gene Class:</B> orf242
<LI><B>Species name:</B> <A
href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/taxon/952">Allomyces
macrogynus</A>
<LI><B>Taxon division:</B> Fungi
<LI><B>Plasmid encoded:</B> no
<LI><B>Partial gene:</B> no
<LI><B>Pseudo:</B> no
<LI><B>Transpliced gene:</B> no
<LI><B>Chloroplast origin:</B> no
<LI><B>Contains intron(s):</B> no
<LI><B>Extracted gene sequence:</B> <A
href="http://alice.bch.umontreal.ca/cgi-bin/godl?-1+-E+gene+-d+gobase+405967">405967</A>
<LI><B>ORF:</B> yes
<LI><B>Gene location on published sequence</B> <PRE><U>From</U> <U>To</U> <U>Strand</U> <U>Sequence(gi)</U> <U>Segment#</U>
9486 10265 plus 1236403 1
</PRE>
<LI><B>Included in intron:</B> yes
<LI><B>Intron embracing the gene:</B> <A
href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/intron/405966">Allo.macr:i5:cob:mt:405966</A>
<LI><B>Upstream genes</B> <PRE><U>Gene</U> <U>For sequence segment#</U> <U>Strand</U>
<A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/gene/405950">Allo.macr:cob:mt:405950</A> 1 plus
<A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/gene/405940">Allo.macr:rnl:mt:405940</A> 1 plus
<A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/gene/405964">Allo.macr:orf233:mt:405964</A> 1 plus
<A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/gene/405960">Allo.macr:orf246:mt:405960</A> 1 plus
</PRE>
<LI><B>Downstream genes</B> <PRE><U>Gene</U> <U>For gene segment#</U> <U>Strand</U>
<A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/gene/405976">Allo.macr:cox2:mt:405976</A> 1 plus
<A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/gene/405975">Allo.macr:cox3:mt:405975</A> 1 plus
<A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/gene/405980">Allo.macr:nad5:mt:405980</A> 1 plus
<A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/gene/405986">Allo.macr:orf261:mt:405986</A> 1 plus
<A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/gene/405971">Allo.macr:orf361:mt:405971</A> 1 plus
</PRE>
<LI><B>Info on published sequence:</B> <A
href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/sequence/153302">dna:mt:Allo.macr:1236403</A>
<LI><B>Genbank accession:</B> U41288
<LI><B>NCBI Entrez record:</B> <A
href="http://alice.bch.umontreal.ca/cgi-bin/flatfile?1236403">1236403</A>
<LI><B>Product type:</B> protein
<LI><B>Product Class:</B> <A
href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/GeneProductClass/75">unidentified
protein</A>
<LI><B>Genetic code:</B> <A
href="http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wprintgc?mode=c#SG1">1</A>
<LI><B>Info on protein:</B> <A
href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/protein/406096">Allo.macr:orf242:mt:1236407</A>
<LI><B>NCBI taxon classification: </B><PRE> <A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/taxon/2">Eukaryota</A>
<A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/taxon/7">eukaryote crown group</A>
<A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/taxon/22">Fungi/Metazoa group</A>
<A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/taxon/38">Fungi</A>
<A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/taxon/76">Chytridiomycota</A>
<A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/taxon/161">Blastocladiales</A>
<A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/taxon/307">Blastocladiaceae</A>
<A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/taxon/593">Allomyces</A>
<A href="http://alice.bch.umontreal.ca/cgi-bin/sybgw/gobase/taxon/952">Allomyces macrogynus</A> </PRE>
<LI><B>GOBASEid#(gene):</B> 405967
<LI><B>GOBASEid#(sequence):</B> 153302
<!-- Genera's output ends here --></LI></UL></BODY></HTML>
|
