1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
|
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
<!-- saved from url=(0062)http://ndbserver.rutgers.edu/NDB/NDBATLAS/A/ah0014/ah0014.html -->
<HTML><HEAD><TITLE>NDB Atlas Entry for Structure AH0014</TITLE>
<META http-equiv=Content-Type content="text/html; charset=windows-1252">
<META content="MSHTML 5.50.4134.600" name=GENERATOR></HEAD>
<BODY bgColor=#ffffff>
<H1>NDB ID: AH0014 </H1>
<P>
<H2>Features </H2>A-Form nucleic acid hybrid double helix, bulges, flipped-out
bases, mismatch
<H2>Compound name </H2>5'-r(GpCpG)-d(pApTpApT)-r(pApCpGpU)-3'
<H2>Sequence in asymmetric unit </H2>
<UL>
<LI>Chain A: G C G A T A T A C G U
<LI>Chain B: G C G A T A T A C G U
<LI>Chain C: G C G A T A T A C G U
<LI>Chain D: G C G A T A T A C G U
<LI>Chain E: G C G A T A T A C G U
<LI>Chain F: G C G A T A T A C G U </LI></UL>
<H2>Citation </H2>V. Tereshko, S. Wallace, N. Usman, F. Wincott, M.
Egli<BR>X-ray crystallographic observation of "in-line" and "adjacent"
conformations in a bulged self-cleaving RNA/DNA hybrid<BR><I>RNA,</I> <B>7</B>,
pp. 405-420, 2001.
<P>
<H2>Space group </H2>P 2<SUB>1</SUB> 2<SUB>1</SUB> 2<SUB>1</SUB>
<H2>Cell constants </H2><PRE> A = 30.530 B = 45.220 C = 162.020 (ngstroms)
alpha = 90.00 beta = 90.00 gamma = 90.00 (degrees)
</PRE>
<H2>Crystallization conditions </H2>
<UL>
<LI>Method: vapor diffusion, sitting drop
<LI>Drop: spermine, MPD
<LI>Reservoir: MPD </LI></UL>
<H2>Refinement </H2>The structure was refined using the CNS 1.0 program. The R
value is 21.7 for 26418 reflections in the resolution range 10.0 to 1.7 with I
> 0.0 sigma(I).
<P>
<H2>Coordinates </H2>The <A
href="http://ndbserver.rutgers.edu/NDB/NDBATLAS/coords/pdb-coord/ah0014.pdb">coordinates
for the asymmetric unit</A> of this structure are stored in the NDB archive.
<P>
<P>
<H2>Views of AH0014 </H2><A
href="http://ndbserver.rutgers.edu/NDB/NDBATLAS/A/ah0014/ah0014_std_views_biol_id_1.html">Four
views of AH0014 (biological unit 1)</A>
<P><A
href="http://ndbserver.rutgers.edu/NDB/NDBATLAS/A/ah0014/ah0014_std_views_biol_id_2.html">Four
views of AH0014 (biological unit 2)</A>
<P><A
href="http://ndbserver.rutgers.edu/NDB/NDBATLAS/A/ah0014/ah0014_std_views_biol_id_3.html">Four
views of AH0014 (biological unit 3)</A>
<P><A
href="http://ndbserver.rutgers.edu/NDB/NDBATLAS/A/ah0014/ah0014_std_packing.html">Crystal
packing of AH0014</A>
<P><PRE>
</PRE>
<HR>
<P align=center><I>1995-2001 The Nucleic Acid Database Project<BR>Rutgers, The
State University of New Jersey </I></P></BODY></HTML>
|
