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#!/usr/bin/env python
"""Test the creation of graphics of distribution information.
Provides tests for the Graphics.Distribution classes which provide the
ability to create graphics to show the distribution of information about
BACs/chromosomes/etc.
"""
# standard library
import os
import sys
import random
# PyUnit
import unittest
# local stuff
from Bio.Graphics.Distribution import BarChartDistribution
from Bio.Graphics.Distribution import LineDistribution
from Bio.Graphics.Distribution import DistributionPage
def run_tests(argv):
ALL_TESTS = [BarChartTest]
runner = unittest.TextTestRunner(sys.stdout, verbosity = 2)
test_loader = unittest.TestLoader()
test_loader.testMethodPrefix = 't_'
for test in ALL_TESTS:
cur_suite = test_loader.loadTestsFromTestCase(test)
runner.run(cur_suite)
def random_distribution(min = -5.0, max = 5.0, total_items = 50):
"""Create a series of random distribution information.
"""
num_items = random.randrange(5, total_items)
all_info = []
for item in range(num_items):
new_item = random.uniform(min, max)
all_info.append(new_item)
return all_info
class BarChartTest(unittest.TestCase):
"""Test display of BarChart distributions on a page.
"""
def setUp(self):
self.simple_page = os.path.join(os.getcwd(), "Graphics", "simple_bar.pdf")
self.multi_page = os.path.join(os.getcwd(), "Graphics", "multi_bar.pdf")
self.num_multi = 5
def t_simple_page(self):
"""Test displaying a page with single distribution.
"""
dist_info = []
new_info = random_distribution()
dist_info.append(new_info)
distribution = BarChartDistribution(dist_info)
dist_page = DistributionPage()
dist_page.distributions.append(distribution)
dist_page.draw(self.simple_page, "Test Bar Chart")
def t_multi_page(self):
"""Create a page with multiple distributions on it.
"""
dist_page = DistributionPage()
dist_page.number_of_columns = 3
for multi in range(self.num_multi):
dist_info = []
new_info = random_distribution()
dist_info.append(new_info)
distribution = BarChartDistribution(dist_info)
distribution.chart_title = "Distribution %s" % (multi + 1)
dist_page.distributions.append(distribution)
dist_page.draw(self.multi_page, "Test Multi Bar Chart")
if __name__ == "__main__":
sys.exit(run_tests(sys.argv))
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