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"""Tests the basic functionality of the CDD parsers.
"""
import os
import sys
import Bio.CDD
from Bio.FilteredReader import FilteredReader
from Bio.FilteredReader import remove_empty_line
from Bio.FilteredReader import remove_leading_whitespace
from Bio.SGMLExtractor import SGMLExtractorHandle
testfiles = [ 'pfam00035', 'pfam01356', 'pfam02903', 'smart00499', 'smart00505' ]
for file in testfiles:
fh = open(os.path.join("CDD", file + '.htm' ))
print "Testing Bio.CDD on " + file + "\n\n"
records = Bio.CDD.Iterator( fh, Bio.CDD.RecordParser(debug_level=0))
# records = Bio.CDD.Iterator( fh, None)
while 1:
record = records.next()
if record is not None:
print record
else:
break
print "\n"
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