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# Copyright 2001 by Katharine Lindner. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#!/usr/bin/env python
"""Test the ECell parser and make sure everything is working smoothly.
"""
# standard library
import os
import copy
# Biopython
from Bio import File
from Bio import FilteredReader
from Bio import ECell
test_files = [ 'sample.txt' ]
# test the parser
record_parser = ECell.RecordParser()
for test in test_files:
datafile = os.path.join( 'ECell', test )
src_handle = open( datafile )
filtered_reader = FilteredReader.FilteredReader( src_handle )
iterator = ECell.Iterator( filtered_reader, record_parser)
# iterator = ECell.Iterator( filtered_reader, None)
while 1:
data = iterator.next()
if not data: break
print data
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