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"""Tests the basic functionality of the GEO parsers.
"""
import os
import Bio.Geo
testfiles = [ 'GSE16.txt', 'GSM645.txt', 'GSM691.txt', 'GSM700.txt', 'GSM804.txt' ]
#Five additional files from the NCBI to document the GEO SOFT file format
#changes made in 2005. Note the new table_begin and table_end lines.
testfiles.extend(['soft_ex_affy.txt',
'soft_ex_affy_chp.txt',
'soft_ex_dual.txt',
'soft_ex_family.txt',
'soft_ex_platform.txt',
'soft_ex_series.txt'])
for file in testfiles:
fh = open(os.path.join("Geo", file))
print "Testing Bio.Geo on " + file + "\n\n"
records = Bio.Geo.parse(fh)
for record in records:
print record
print "\n"
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