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# Copyright 2001 by Katharine Lindner. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#!/usr/bin/env python
"""Test the IntelliGenetics parser and make sure everything is working smoothly.
"""
# standard library
import os
import copy
# Biopython
from Bio import File
from Bio import IntelliGenetics
intelligenetics_file_dir = os.path.join(os.getcwd(), 'IntelliGenetics')
test_files = [ 'TAT_mase_nuc.txt', 'VIF_mase-pro.txt', 'vpu_nucaligned.txt' ]
# test the parser
record_parser = IntelliGenetics.RecordParser()
for test in test_files:
datafile = os.path.join( 'IntelliGenetics', test )
src_handle = open( datafile )
iterator = IntelliGenetics.Iterator(src_handle, record_parser)
while 1:
data = iterator.next()
if not data: break
print data
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