File: test_interpro.py

package info (click to toggle)
python-biopython 1.45-3
  • links: PTS, VCS
  • area: main
  • in suites: lenny
  • size: 18,192 kB
  • ctags: 12,310
  • sloc: python: 83,505; xml: 13,834; ansic: 7,015; cpp: 1,855; sql: 1,144; makefile: 179
file content (29 lines) | stat: -rw-r--r-- 757 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
# Copyright 2001 by Katharine Lindner.  All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license.  Please see the LICENSE file that should have been included
# as part of this package.

#!/usr/bin/env python
"""Test the InterPro parser and make sure everything is working smoothly.
"""
# standard library
import os

# Biopython
from Bio import InterPro

test_files = ['IPR001064.htm', 'IPR001171.htm', 'IPR001391.htm',
              'IPR001442.htm', 'IPR001571.htm']



# test the parser
record_parser = InterPro.InterProParser()

for test in test_files:
    datafile = os.path.join( 'InterPro', test )
    src_handle = open( datafile )
    data = record_parser.parse( src_handle )
    print data
    print '\n'