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# Copyright 1999 by Cayte Lindner. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
import os
from Bio.Prosite import Prodoc
tests = ['pdoc00100.txt',
'pdoc00113.txt',
'pdoc00144.txt',
'pdoc00149.txt',
'pdoc00340.txt',
'pdoc00424.txt',
'pdoc00472.txt',
'pdoc00640.txt',
'pdoc00787.txt',
'pdoc00933.txt',
]
def print_list( list ):
for item in list:
print( ' ' + str( item ) )
def print_references( list ):
for item in list:
print item.number
print item.authors
print item.citation
for test in tests:
datafile = os.path.join( 'Prosite', 'Doc', test )
src_handle = open( datafile )
data = Prodoc.read(src_handle)
print data.accession
print 'prosite_refs'
print_list(data.prosite_refs)
print data.text
print 'references'
print_references(data.references)
src_handle.close()
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