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# Copyright 1999 by Cayte Lindner. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
import os
from Bio import Prosite
tests = [ 'ps00107.txt',
'ps00159.txt',
'ps00165.txt',
'ps00432.txt',
'ps00488.txt',
'ps00546.txt' ]
def print_list( list ):
for item in list:
print( ' ' + str( item ) )
for test in tests:
print "testing %s" % test
datafile = os.path.join( 'Prosite', test )
src_handle = open(datafile)
data = Prosite.read(src_handle)
print data.name
print data.type
print data.accession
print data.created
print data.data_update
print data.info_update
# print data.data_info
print data.pdoc
print data.description
print data.pattern
print data.matrix
print data.rules
print data.nr_sp_release
print data.nr_sp_seqs
print data.cc_taxo_range
print data.cc_max_repeat
# print data.name
print 'cc_site'
print_list( data.cc_site )
print 'dr_positive'
print_list( data.dr_positive )
print 'dr_false_neg'
print_list( data.dr_false_neg )
print 'dr_false_pos'
print_list( data.dr_false_pos )
print 'dr_potential'
print_list( data.dr_potential )
print 'dr_unknown'
print_list( data.dr_unknown )
print 'pdb_structs'
print_list( data.pdb_structs )
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