1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
|
# Copyright 1999 by Katharine Lindner. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
import os
import types
import string
from types import *
from Bio import File
from Bio import ParserSupport
from Bio import Rebase
tests = [ 'bamii.htm', 'cac81.htm', 'crei.htm', 'foki.htm', 'pvuii.htm', \
'taqi.htm' ]
record_parser = Rebase.RecordParser()
for test in tests:
print "testing %s" % test
datafile = os.path.join( 'Rebase', test )
src_handle = open( datafile )
data = record_parser.parse( src_handle )
print data.seq_5_to_3
print '\n'
|
