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BLAST TEST DATA FILES
=====================
This directory contains various data files for testing the
BLAST-related code in Biopython.
BLAST OUTPUT FILES (plain text)
-------------------------------
ID PROGRAM VER. QUERY DATABASE PARAMETERS DESCRIPTION
bt001 blastall 2.0.10 sp:P21297 swissprot -p blastp
bt002 blastall 2.0.10 sp:Q02112 pdbaa -p blastp no hits
bt003 blastall 2.0.10 sp:P16153 swissprot -p blastp -v 0 no descriptions
bt004 blastall 2.0.10 sp:P16153 swissprot -p blastp -b 0 no alignments
bt005 blastall 2.0.10 sp:P15394 swissprot -p blastp -m 6 master-slave
bt006 blastpgp 2.0.10 sp:P12921 swissprot -j 10 converges in 1 round
bt007 blastpgp 2.0.10 sp:P17216 swissprot -j 10 converges in 3 rounds
*bt008 blastpgp 2.0.10 sp:P33654 swissprot -j 10 doesn't converge
bt009 blastpgp 2.0.10 sp:Q02134 swissprot -j 10 no new sequences before CONVERGED! message
bt010 blastall 2.0.10 gi:1348916 sts -p blastn
bt011 blastall 2.0.10 gi:1348400 sts -p blastn -b 0 no alignment
bt012 blastall 2.0.10 gi:1347201 sts -p blastn -v 0 no descriptions
bt013 blastall 2.0.10 gi:859351 sts -p blastn -m 1 master-slave
bt014 blastall 2.0.10 gi:1347369 swissprot -p blastx
bt015 blastall 2.0.10 gi:1347782 swissprot -p blastx no hits
bt016 blastall 2.0.10 sp:P39483 sts -p tblastn
bt017 blastall 2.0.10 sp:P19888 sts -p tblastn no hits
bt018 blastall 2.0.10 gi:1348853 sts -p tblastx
bt019 NCBI WWW 2.0.10 sp:P21297 swissprot blastp
bt020 NCBI WWW 2.0.10 sp:P54929 pdb blastp no hits
bt021 NCBI WWW 2.0.10 sp:P16153 swissprot blastp descriptions=0
bt022 NCBI WWW 2.0.10 sp:P16153 swissprot blastp alignments=0
bt023 NCBI WWW 2.0.10 sp:P15394 swissprot blastp flat master-slave without identities
bt024 NCBI WWW 2.0.10 gi:1348916 dbsts blastn
bt025 NCBI WWW 2.0.10 gi:1348400 dbsts blastn alignments=0
bt026 NCBI WWW 2.0.10 gi:1347201 dbsts blastn descriptions=0
bt027 NCBI WWW 2.0.10 gi:859351 dbsts blastn master-slave with identities
bt028 NCBI WWW 2.0.10 gi:1347369 swissprot blastx
bt029 NCBI WWW 2.0.10 gi:1347782 swissprot blastx no hits
bt030 NCBI WWW 2.0.10 sp:P39483 dbsts tblastn
bt031 NCBI WWW 2.0.10 sp:P19888 dbsts tblastn no hits
bt032 NCBI WWW 2.0.10 gi:1348853 dbsts tblastx
bt033 NCBI WWW 2.0.10 gi:1593528 dbsts blastx >1 HSP in alignment
bt034 NCBI WWW 2.0.10 gi:1347369 swissprot blastx no header info
bt035 NCBI WWW 2.0.10 sp:P23832 swissprot blastp >1 HSP in alignment
bt036 NCBI WWW 2.0.10 sp:P29247 swissprot blastp no graphical overview
bt037 NCBI WWW 2.0.10 sp:Q06110 swissprot blastp no graphical overview descriptions=0
bt038 NCBI WWW 2.0.10 sp:Q06110 swissprot blastp descriptions=0 master-slave without identities
bt039 blastall 2.0.10 sp:Q08386 swissprot -p blastp >1 HSP in alignment
bt040 blastall 2.0.10 sp:Q05362 swissprot -p blastp -v 0 -m 4 no descriptions, master-slave
bt041 blastall 2.0.11 sp:P21297 swissprot -p blastp
bt042 blastall 2.0.11 sp:Q02112 pdbaa -p blastp no hits
bt043 blastall 2.0.11 sp:P16153 swissprot -p blastp -v 0 no descriptions
bt044 blastall 2.0.11 sp:P16153 swissprot -p blastp -b 0 no alignments
bt045 blastall 2.0.11 sp:P15394 swissprot -p blastp -m 6 master-slave
bt046 blastpgp 2.0.11 sp:P12921 swissprot -j 10 converges in 2 rounds
bt047 blastpgp 2.0.11 sp:Q02134 swissprot -j 10 no new sequences before CONVERGED! message
bt048 blastall 2.0.11 gi:1348916 sts -p blastn
bt049 blastall 2.0.11 gi:1348400 sts -p blastn -b 0 no alignment
bt050 blastall 2.0.11 gi:1347201 sts -p blastn -v 0 no descriptions
bt051 blastall 2.0.11 gi:859351 sts -p blastn -m 1 master-slave
bt052 blastall 2.0.11 gi:1347369 swissprot -p blastx
bt053 blastall 2.0.11 gi:1347782 swissprot -p blastx no hits
bt054 blastall 2.0.11 sp:P39483 sts -p tblastn
bt055 blastall 2.0.11 sp:P19888 sts -p tblastn no hits
bt056 blastall 2.0.11 gi:1348853 sts -p tblastx
bt057 blastall 2.0.11 sp:Q08386 swissprot -p blastp >1 HSP in alignment
bt058 blastall 2.0.11 sp:Q05362 swissprot -p blastp -v 0 -m 4 no descriptions, master-slave
bt059 blastpgp 2.0.11 sp:P07175 swissprot -m 6 multiple HSP (41943)
bt060 blastpgp 2.0.12 multiple db, Mike Poidinger
bt061 NCBI WWW 2.0.14 sp:P06563 swissprot blastp
bt062 blastall 2.0.14 gi:1348916 sts -p blastn
bt063 blastpgp 2.0.14 ad-hoc from Mike Poidinger, no model sequences found
bt064 NCBIWWW 2.1.12 ad-hoc from Brad Chapman
bt065 blastn 2.1.2 ad-hoc no hits found
bt066 NCBIWWW 2.1.3 ad-hoc 6/3/01 new format
bt067 blastall 2.2.1 ad-hoc -p blastx No 'length of query'
...
bt072 NCBIWWW 2.2.4 ad-hoc
bt073 NCBIWWW 2.2.4 ad-hoc Confusing sequences line in the database
bt074 NCBIWWW 2.2.4 ad-hoc -p blastp nov 2002 new format
bt075 blastpgp 2.2.8 ad-hoc from Jer-Yee John Chuang, no Searching... lines
bt076 blastall 2.2.15 ad-hoc -p blastx no hits, single query
bt077 blastall 2.2.20 ad-hoc nr -p blastx single query
bt078 blastall 2.2.20 opuntia nr -p blastx multiple queries, most with no hits
bt079 blastall 2.2.21 ad-hoc nr -p blastp multiple queries
bt080 blastall 2.2.22 ad-hoc nr -p blastx multiple queries
bt081 blastx 2.2.22+ nr the new C++ BLAST toolkit, multiple queries
* bt008 is not included because the file is too big (>15Mb).
BLAST OUTPUT FILES (XML)
------------------------
xbt001.xml - BLASTP 2.2.12
xbt002.xml - BLASTN 2.2.12
xbt003.xml - BLASTX 2.2.12
xbt004.xml - TBLASTN 2.2.12
xbt005.xml - TBLASTX 2.2.12
xbt006.xml - BLASTP 2.2.18+
xbt007.xml - BLASTP 2.2.18+
xbt008.xml - blastp 2.2.18
xbt009.xml - blastx 2.2.22+ (the new C++ tool blastx, not blastall - compare with bt081.txt file)
xbt010.xml - blastp 2.2.22+ (the new C++ tool blastp, not blastall)
xbt011.xml - RPSBLAST 2.2.18 (the old C tool blastpgp)
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