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BLASTP 2.0.14 [Jun-29-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= aseq
(82 letters)
Database: SWISS_PROT
87,404 sequences; 31,753,758 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
YMZ9_YEAST Q04439 saccharomyces cerevisiae (baker's yeast). ... 27 6.0
DPOL_WHVW6 P11292 woodchuck hepatitis virus w64 (isolate pws... 27 7.9
DPOL_WHV8I P17396 woodchuck hepatitis virus 8 (infectious cl... 27 7.9
DPOL_WHV8 P06275 woodchuck hepatitis virus 8 (whv 8). dna po... 27 7.9
DPOL_WHV7 P12898 woodchuck hepatitis virus 7 (whv 7). dna po... 27 7.9
DPOL_WHV59 P12899 woodchuck hepatitis virus 59 (whv 59). dna... 27 7.9
>YMZ9_YEAST Q04439 saccharomyces cerevisiae (baker's yeast). hypothetical
myosin-like protein in ilv2-ade17 intergenic region.
5/2000
Length = 1219
Score = 27.4 bits (59), Expect = 6.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 52 NLIALQHIPLSPAGVIAKRPAP 73
++ A QH+P +PA +K+PAP
Sbjct: 992 SIAAAQHVPTAPASRHSKKPAP 1013
>DPOL_WHVW6 P11292 woodchuck hepatitis virus w64 (isolate pws23). dna
polymerase (ec 2.7.7.7) (fragment). 12/1998
Length = 556
Score = 27.0 bits (58), Expect = 7.9
Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)
Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
+HWP F N+ T L NL A HIP+SPA V
Sbjct: 115 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 157
>DPOL_WHV8I P17396 woodchuck hepatitis virus 8 (infectious clone) (whv 8). dna
polymerase (ec 2.7.7.7). 12/1998
Length = 884
Score = 27.0 bits (58), Expect = 7.9
Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)
Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
+HWP F N+ T L NL A HIP+SPA V
Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485
>DPOL_WHV8 P06275 woodchuck hepatitis virus 8 (whv 8). dna polymerase (ec
2.7.7.7). 12/1998
Length = 883
Score = 27.0 bits (58), Expect = 7.9
Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)
Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
+HWP F N+ T L NL A HIP+SPA V
Sbjct: 442 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 484
>DPOL_WHV7 P12898 woodchuck hepatitis virus 7 (whv 7). dna polymerase (ec
2.7.7.7). 12/1998
Length = 884
Score = 27.0 bits (58), Expect = 7.9
Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)
Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
+HWP F N+ T L NL A HIP+SPA V
Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485
>DPOL_WHV59 P12899 woodchuck hepatitis virus 59 (whv 59). dna polymerase (ec
2.7.7.7). 12/1998
Length = 884
Score = 27.0 bits (58), Expect = 7.9
Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)
Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
+HWP F N+ T L NL A HIP+SPA V
Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
Sequences not found previously or not previously below threshold:
YMZ9_YEAST Q04439 saccharomyces cerevisiae (baker's yeast). ... 27 5.9
DPOL_WHVW6 P11292 woodchuck hepatitis virus w64 (isolate pws... 27 5.9
DPOL_WHV8I P17396 woodchuck hepatitis virus 8 (infectious cl... 27 5.9
DPOL_WHV8 P06275 woodchuck hepatitis virus 8 (whv 8). dna po... 27 5.9
DPOL_WHV7 P12898 woodchuck hepatitis virus 7 (whv 7). dna po... 27 5.9
DPOL_WHV59 P12899 woodchuck hepatitis virus 59 (whv 59). dna... 27 5.9
DPOL_HPBGS P03161 ground squirrel hepatitis virus (gshv). dn... 27 7.8
CONVERGED!
>YMZ9_YEAST Q04439 saccharomyces cerevisiae (baker's yeast). hypothetical
myosin-like protein in ilv2-ade17 intergenic region.
5/2000
Length = 1219
Score = 27.4 bits (59), Expect = 5.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 52 NLIALQHIPLSPAGVIAKRPAP 73
++ A QH+P +PA +K+PAP
Sbjct: 992 SIAAAQHVPTAPASRHSKKPAP 1013
>DPOL_WHVW6 P11292 woodchuck hepatitis virus w64 (isolate pws23). dna
polymerase (ec 2.7.7.7) (fragment). 12/1998
Length = 556
Score = 27.4 bits (59), Expect = 5.9
Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)
Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
+HWP F N+ T L NL A HIP+SPA V
Sbjct: 115 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 157
>DPOL_WHV8I P17396 woodchuck hepatitis virus 8 (infectious clone) (whv 8). dna
polymerase (ec 2.7.7.7). 12/1998
Length = 884
Score = 27.4 bits (59), Expect = 5.9
Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)
Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
+HWP F N+ T L NL A HIP+SPA V
Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485
>DPOL_WHV8 P06275 woodchuck hepatitis virus 8 (whv 8). dna polymerase (ec
2.7.7.7). 12/1998
Length = 883
Score = 27.4 bits (59), Expect = 5.9
Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)
Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
+HWP F N+ T L NL A HIP+SPA V
Sbjct: 442 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 484
>DPOL_WHV7 P12898 woodchuck hepatitis virus 7 (whv 7). dna polymerase (ec
2.7.7.7). 12/1998
Length = 884
Score = 27.4 bits (59), Expect = 5.9
Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)
Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
+HWP F N+ T L NL A HIP+SPA V
Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485
>DPOL_WHV59 P12899 woodchuck hepatitis virus 59 (whv 59). dna polymerase (ec
2.7.7.7). 12/1998
Length = 884
Score = 27.4 bits (59), Expect = 5.9
Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)
Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
+HWP F N+ T L NL A HIP+SPA V
Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485
>DPOL_HPBGS P03161 ground squirrel hepatitis virus (gshv). dna polymerase (ec
2.7.7.7) (a protein). 12/1998
Length = 881
Score = 27.0 bits (58), Expect = 7.8
Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)
Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
+HWP F N+ T L NL A HIP+SPA V
Sbjct: 440 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPVSPAAV 482
Database: /dbase/swissprot/main/release/sp
Posted date: Jun 21, 2000 12:39 PM
Number of letters in database: 31,411,157
Number of sequences in database: 86,593
Database: /dbase/swissprot/main/update/spu
Posted date: Jul 30, 2000 11:00 PM
Number of letters in database: 342,601
Number of sequences in database: 811
Lambda K H
0.318 0.132 0.422
Lambda K H
0.270 0.0464 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7377465
Number of Sequences: 87404
Number of extensions: 229017
Number of successful extensions: 569
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 13
length of query: 82
length of database: 31,753,758
effective HSP length: 44
effective length of query: 38
effective length of database: 27,907,982
effective search space: 1060503316
effective search space used: 1060503316
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 58 (27.0 bits)
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