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BLASTX 2.2.22+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
8,994,603 sequences; 3,078,807,967 total letters
Query= gi|4104054|gb|AH007193.1|SEG_CVIGS Centaurea vallesiaca 18S
ribosomal RNA gene, partial sequence
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
gb|ABR25402.1| unknown [Oryza sativa (indica cultivar-group)] 54.3 2e-05
>gb|ABR25402.1| unknown [Oryza sativa (indica cultivar-group)]
Length=26
Score = 54.3 bits (129), Expect = 2e-05
Identities = 24/26 (92%), Positives = 25/26 (96%), Gaps = 0/26 (0%)
Frame = +2
Query 911 HMLVSKIKPCMCKYEQIQTVKLRMAH 988
HMLVSKIKPCMCKYE I+TVKLRMAH
Sbjct 1 HMLVSKIKPCMCKYELIRTVKLRMAH 26
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 367397307882
Query= gi|4218935|gb|AF074388.1|AF074388 Sambucus nigra hevein-like
protein HLPf gene, partial cds
Length=2050
Score E
Sequences producing significant alignments: (Bits) Value
gb|AAD12237.1| hevein-like protein HLPf [Sambucus nigra] 410 3e-112
gb|AAD11408.1| hevein-like protein [Sambucus nigra] 406 5e-111
gb|AAD11406.1| hevein-like protein [Sambucus nigra] 406 5e-111
gb|AAD11407.1| hevein-like protein [Sambucus nigra] 395 7e-108
gb|AAL30421.1|AF434174_1 hevein-like protein [Sambucus nigra] 384 2e-104
gb|AAL30422.1|AF434175_1 hevein-like protein [Sambucus nigra] 279 9e-73
gb|AAO17294.1| chitinase [Ficus carica] 189 7e-46
gb|ACM45713.1| class I chitinase [Pyrus pyrifolia] 185 2e-44
dbj|BAB40817.2| endochitinase MCHT-2 [Cucumis melo] 181 2e-43
gb|ABB86300.1| chitinase [Ficus awkeotsang] 181 3e-43
>gb|AAD12237.1| hevein-like protein HLPf [Sambucus nigra]
Length=333
Score = 410 bits (1053), Expect = 3e-112
Identities = 199/238 (83%), Positives = 200/238 (84%), Gaps = 33/238 (13%)
Frame = +1
Query 1 MKLSTLLILSFPFLLGTIVFADDADNGPWQCGRDAGGALCHDNLCCSFWGFCGSTYQYCE 180
MKLSTLLILSFPFLLGTIVFADDADNGPWQCGRDAGGALCHDNLCCSFWGFCGSTYQYCE
Sbjct 1 MKLSTLLILSFPFLLGTIVFADDADNGPWQCGRDAGGALCHDNLCCSFWGFCGSTYQYCE 60
Query 181 DGCQSQCRDTSRLTDLPRALLRPTNNRNAISKMISKSLFNEMFKHMKDCPSRGFYSYEAF 360
DGCQSQCRDTSRLTDLPRALLRPTNNRNAISKMISKSLFNEMFKHMKDCPSRGFYSYEAF
Sbjct 61 DGCQSQCRDTSRLTDLPRALLRPTNNRNAISKMISKSLFNEMFKHMKDCPSRGFYSYEAF 120
Query 361 ITAARSFPGFCTSGDVATRKREPAAFLsqtsqattg*ssNLNIYLC*EIISTIYICFEIN 540
ITAARSFPGFCTSGDVATRKREPAAFLS
Sbjct 121 ITAARSFPGFCTSGDVATRKREPAAFLS-------------------------------- 148
Query 541 LRTWMLGVGGRLDSAVVDPHAWGYCYVNGTTDEQYCTSSNWPCASGKQYNRRGPIQLT 714
+T GGRLDSAVVDPHAWGYCYVNGTTDEQYCTSSNWPCASGKQYNRRGPIQLT
Sbjct 149 -QTSQATTGGRLDSAVVDPHAWGYCYVNGTTDEQYCTSSNWPCASGKQYNRRGPIQLT 205
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 967993058520
Query= gi|5690369|gb|AF158246.1|AF158246 Cricetulus griseus glucose
phosphate isomerase (GPI) gene, partial intron sequence
Length=550
***** No hits found *****
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 108443629616
Query= gi|5049839|gb|AI730987.1|AI730987 BNLGHi8354 Six-day Cotton fiber
Gossypium hirsutum cDNA 5' similar to TUBULIN BETA-1 CHAIN
gi|486734|pir|S35142 tubulin beta chain - white lupine gi|402636
(X70184) Beta tubulin 1 [Lupinus albus], mRNA sequence
Length=655
Score E
Sequences producing significant alignments: (Bits) Value
gb|ABY86655.1| beta-tubulin 4 [Gossypium hirsutum] 408 2e-112
gb|EEF51386.1| tubulin beta chain, putative [Ricinus communis] 406 7e-112
ref|NP_568437.1| TUB8 (tubulin beta-8) [Arabidopsis thaliana] >s... 405 2e-111
ref|XP_002271992.1| PREDICTED: hypothetical protein [Vitis vinif... 402 1e-110
gb|AAK96884.1| beta tubulin [Arabidopsis thaliana] >gb|AAM10035.... 402 1e-110
ref|XP_002267380.1| PREDICTED: hypothetical protein [Vitis vinif... 402 1e-110
sp|P37392.1|TBB1_LUPAL RecName: Full=Tubulin beta-1 chain; AltNa... 402 1e-110
ref|XP_002313404.1| tubulin, beta chain [Populus trichocarpa] >g... 401 2e-110
gb|EEF51167.1| tubulin beta chain, putative [Ricinus communis] 400 4e-110
ref|XP_002299541.1| tubulin, beta chain [Populus trichocarpa] >g... 400 4e-110
>gb|ABY86655.1| beta-tubulin 4 [Gossypium hirsutum]
Length=448
Score = 408 bits (1048), Expect = 2e-112
Identities = 196/201 (97%), Positives = 197/201 (98%), Gaps = 0/201 (0%)
Frame = +2
Query 50 MREILHIQAGQCGNQIGANFWEVVCAEHGINSTGRYQGDNDLQLERVNVYYNEASCGRFV 229
MREILHIQAGQCGNQIGA FWEVVCAEHGI+STGRYQGDNDLQLERVNVYYNEASCGRFV
Sbjct 1 MREILHIQAGQCGNQIGAKFWEVVCAEHGIDSTGRYQGDNDLQLERVNVYYNEASCGRFV 60
Query 230 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSXLDVV 409
PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDS LDVV
Sbjct 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query 410 RKEAENCDCLQGFQVCHSLGRGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 589
RKEAENCDCLQGFQVCHSLG GTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query 590 EPYNATLSVHXLVENADECMV 652
EPYNATLSVH LVENADECMV
Sbjct 181 EPYNATLSVHQLVENADECMV 201
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 165344802738
Query= gi|5052071|gb|AF067555.1|AF067555 Phlox stansburyi internal
transcribed spacer 1, 5.8S ribosomal RNA gene, and internal
transcribed spacer 2, complete sequence
Length=623
Score E
Sequences producing significant alignments: (Bits) Value
dbj|BAE98425.1| hypothetical protein [Arabidopsis thaliana] 93.6 6e-19
gb|EEH50844.1| predicted protein [Micromonas pusilla CCMP1545] 96.3 2e-18
ref|XP_001786502.1| predicted protein [Physcomitrella patens sub... 75.1 4e-12
ref|XP_001786120.1| predicted protein [Physcomitrella patens sub... 73.2 2e-11
ref|XP_001786259.1| predicted protein [Physcomitrella patens sub... 73.2 2e-11
ref|XP_001786759.1| predicted protein [Physcomitrella patens sub... 73.2 2e-11
ref|XP_001786133.1| predicted protein [Physcomitrella patens sub... 70.9 8e-11
sp|Q8TGM5|ART3_YEAST Uncharacterized protein ART3 (Antisense to ... 58.9 3e-07
ref|XP_001786634.1| predicted protein [Physcomitrella patens sub... 57.4 9e-07
ref|XP_453851.1| unnamed protein product [Kluyveromyces lactis] 56.2 2e-06
>dbj|BAE98425.1| hypothetical protein [Arabidopsis thaliana]
Length=80
Score = 93.6 bits (231), Expect(2) = 6e-19
Identities = 42/48 (87%), Positives = 45/48 (93%), Gaps = 1/48 (2%)
Frame = +1
Query 283 MKNVAKCDTWCELQNPVNHRVFERKLRPKPLGRGHVCLGVSHRVAPNP 426
MKNVAKCDTWCELQNPVNHRVFERKLRPKP GRGHVCLGV++R P+P
Sbjct 1 MKNVAKCDTWCELQNPVNHRVFERKLRPKPSGRGHVCLGVTNR-RPSP 47
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 147032237429
Query= gi|3176602|gb|U78617.1|LOU78617 Lathyrus odoratus phytochrome A
(PHYA) gene, partial cds
Length=309
Score E
Sequences producing significant alignments: (Bits) Value
gb|AAC18749.1| phytochrome A [Lathyrus odoratus] 213 4e-54
sp|P15001.1|PHYA_PEA RecName: Full=Phytochrome A >gb|AAA33682.1|... 208 1e-52
sp|P93673.1|PHYA_LATSA RecName: Full=Phytochrome type A >gb|AAB4... 208 1e-52
gb|AAC18745.1| phytochrome A [Lennea melanocarpa] >gb|AAC18746.1... 207 2e-52
gb|AAC18675.1| phytochrome A [Sophora affinis] 207 2e-52
gb|AAC18670.1| phytochrome A [Myrospermum sousanum] 206 5e-52
gb|AAC18750.1| phytochrome A [Hybosema robustum] 206 6e-52
gb|AAC18668.1| phytochrome A [Cyclolobium nutans] 206 8e-52
gb|AAC18709.1| phytochrome A [Millettia richardiana] 205 1e-51
gb|AAC18693.1| phytochrome A [Callerya atropurpurea] 204 2e-51
>gb|AAC18749.1| phytochrome A [Lathyrus odoratus]
Length=103
Score = 213 bits (543), Expect = 4e-54
Identities = 103/103 (100%), Positives = 103/103 (100%), Gaps = 0/103 (0%)
Frame = +1
Query 1 QAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIA 180
QAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIA
Sbjct 1 QAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIA 60
Query 181 SLVMAVVVNDSDEDGDSRDAVLPQKKKRLWGLVVCHNTTPRFV 309
SLVMAVVVNDSDEDGDSRDAVLPQKKKRLWGLVVCHNTTPRFV
Sbjct 61 SLVMAVVVNDSDEDGDSRDAVLPQKKKRLWGLVVCHNTTPRFV 103
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 75367093081
Query= gi|5817701|gb|AF142731.1|AF142731 Wisteria frutescens maturase-like
protein (matK) gene, complete cds; chloroplast gene for chloroplast
product
Length=2551
Score E
Sequences producing significant alignments: (Bits) Value
sp|Q9TKP6.1|MATK_WISFR RecName: Full=Maturase K; AltName: Full=I... 948 0.0
gb|ACB58148.1| maturase K [Wisteria frutescens] 946 0.0
gb|ACB58149.1| maturase K [Wisteria frutescens] >gb|ACB58150.1| ... 945 0.0
gb|ACB58142.1| maturase K [Callerya megasperma] 944 0.0
gb|AAD52903.1|AF142732_1 maturase-like protein [Wisteria sinensi... 936 0.0
gb|ACB58143.1| maturase K [Wisteria brachybotrys] 928 0.0
gb|AAD52904.1|AF142733_1 maturase-like protein [Callerya reticul... 925 0.0
gb|AAD52905.1|AF142734_1 maturase-like protein [Callerya atropur... 890 0.0
gb|ABS20107.1| maturase-like protein [Astragalus uliginosus] 887 0.0
dbj|BAF57483.1| maturase [Glycyrrhiza uralensis] >dbj|BAF57484.1... 887 0.0
>sp|Q9TKP6.1|MATK_WISFR RecName: Full=Maturase K; AltName: Full=Intron maturase
gb|AAD52902.1|AF142731_1 maturase-like protein [Wisteria frutescens]
Length=506
Score = 948 bits (2451), Expect = 0.0
Identities = 506/506 (100%), Positives = 506/506 (100%), Gaps = 0/506 (0%)
Frame = +1
Query 727 MKEYQVYLERDRSRQQDFLYPLIFREYIYGLAYSHDFNRSIFVENVGYDNKSSLLIVKRL 906
MKEYQVYLERDRSRQQDFLYPLIFREYIYGLAYSHDFNRSIFVENVGYDNKSSLLIVKRL
Sbjct 1 MKEYQVYLERDRSRQQDFLYPLIFREYIYGLAYSHDFNRSIFVENVGYDNKSSLLIVKRL 60
Query 907 ITRMYQQNHLIISANDSNKNPFLGYNKNFYSQIISDGFAVVVEIPFFLQLSSSLEEAEIV 1086
ITRMYQQNHLIISANDSNKNPFLGYNKNFYSQIISDGFAVVVEIPFFLQLSSSLEEAEIV
Sbjct 61 ITRMYQQNHLIISANDSNKNPFLGYNKNFYSQIISDGFAVVVEIPFFLQLSSSLEEAEIV 120
Query 1087 KSYHNLRSIHSIFPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDASffhllrff 1266
KSYHNLRSIHSIFPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDASFFHLLRFF
Sbjct 121 KSYHNLRSIHSIFPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDASFFHLLRFF 180
Query 1267 lyhfSNRNSLITPKKSISTFSKSNPRLFLFLYNFYVCEYESIFRFLRNQSSHLRLKSFSV 1446
LYHFSNRNSLITPKKSISTFSKSNPRLFLFLYNFYVCEYESIFRFLRNQSSHLRLKSFSV
Sbjct 181 LYHFSNRNSLITPKKSISTFSKSNPRLFLFLYNFYVCEYESIFRFLRNQSSHLRLKSFSV 240
Query 1447 FFERIFFYAKREHLVKVFPKDFSSTLTFFKDPFIHYVRYQGKSILASKNAPLLMNKWKHY 1626
FFERIFFYAKREHLVKVFPKDFSSTLTFFKDPFIHYVRYQGKSILASKNAPLLMNKWKHY
Sbjct 241 FFERIFFYAKREHLVKVFPKDFSSTLTFFKDPFIHYVRYQGKSILASKNAPLLMNKWKHY 300
Query 1627 FIHLWQCFFDVWSQPGTIHINQLSEHSFHFLGYFSNVRLNRSVVRSQMLQNTFLIEIVIK 1806
FIHLWQCFFDVWSQPGTIHINQLSEHSFHFLGYFSNVRLNRSVVRSQMLQNTFLIEIVIK
Sbjct 301 FIHLWQCFFDVWSQPGTIHINQLSEHSFHFLGYFSNVRLNRSVVRSQMLQNTFLIEIVIK 360
Query 1807 KLDIIVPIIPLIRSLAKAKFCNVLGHPLSKSVWADSSDFDIIDRFLRICRNLSHYYNGSS 1986
KLDIIVPIIPLIRSLAKAKFCNVLGHPLSKSVWADSSDFDIIDRFLRICRNLSHYYNGSS
Sbjct 361 KLDIIVPIIPLIRSLAKAKFCNVLGHPLSKSVWADSSDFDIIDRFLRICRNLSHYYNGSS 420
Query 1987 KKKNLYRIKYILRLSCIKTLACKHKSTVRAFLKKSGseelleeffteeeeilslifPRTS 2166
KKKNLYRIKYILRLSCIKTLACKHKSTVRAFLKKSGSEELLEEFFTEEEEILSLIFPRTS
Sbjct 421 KKKNLYRIKYILRLSCIKTLACKHKSTVRAFLKKSGSEELLEEFFTEEEEILSLIFPRTS 480
Query 2167 STLQRLHRNRIWYLDILFSNDLVNHE 2244
STLQRLHRNRIWYLDILFSNDLVNHE
Sbjct 481 STLQRLHRNRIWYLDILFSNDLVNHE 506
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1251086325060
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Jun 4, 2009 5:41 PM
Number of letters in database: 3,078,807,967
Number of sequences in database: 8,994,603
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 12
Window for multiple hits: 40
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