1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
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########################################
# Program: matcher
# Rundate: Tue 8 Dec 2009 12:01:34
# Commandline: matcher
# [-asequence] hba_human.fasta
# [-bsequence] hbb_human.fasta
# [-outfile] matcher_pair.txt
# -alternatives 5
# -aformat pair
# -sprotein
# Align_format: pair
# Report_file: matcher_pair.txt
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: HBA_HUMAN
# 2: HBB_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 14
# Extend_penalty: 4
#
# Length: 145
# Identity: 63/145 (43.4%)
# Similarity: 88/145 (60.7%)
# Gaps: 8/145 ( 5.5%)
# Score: 264
#
#
#=======================================
HBA_HUMAN 3 LSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSH 51
|:|.:|:.|.|.|||| :..|.|.|||.|:.:.:|.|:.:|..| |||.
HBB_HUMAN 4 LTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLST 51
HBA_HUMAN 52 -----GSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDP 96
|:.:||.|||||..|.::.:||:|::....:.||:||..||.|||
HBB_HUMAN 52 PDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDP 101
HBA_HUMAN 97 VNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY 141
.||:||.:.|:..||.|...||||.|.|:..|.:|.|:..|..||
HBB_HUMAN 102 ENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY 146
#=======================================
#
# Aligned_sequences: 2
# 1: HBA_HUMAN
# 2: HBB_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 14
# Extend_penalty: 4
#
# Length: 13
# Identity: 6/13 (46.2%)
# Similarity: 9/13 (69.2%)
# Gaps: 0/13 ( 0.0%)
# Score: 32
#
#
#=======================================
HBA_HUMAN 61 KKVADALTNAVAH 73
:||...:.||:||
HBB_HUMAN 132 QKVVAGVANALAH 144
#=======================================
#
# Aligned_sequences: 2
# 1: HBA_HUMAN
# 2: HBB_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 14
# Extend_penalty: 4
#
# Length: 18
# Identity: 7/18 (38.9%)
# Similarity: 10/18 (55.6%)
# Gaps: 0/18 ( 0.0%)
# Score: 28
#
#
#=======================================
HBA_HUMAN 91 KLRVDPVNFKLLSHCLLV 108
|:.||.|..:.|...|:|
HBB_HUMAN 18 KVNVDEVGGEALGRLLVV 35
#=======================================
#
# Aligned_sequences: 2
# 1: HBA_HUMAN
# 2: HBB_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 14
# Extend_penalty: 4
#
# Length: 10
# Identity: 6/10 (60.0%)
# Similarity: 6/10 (60.0%)
# Gaps: 0/10 ( 0.0%)
# Score: 23
#
#
#=======================================
HBA_HUMAN 81 LSALSDLHAH 90
|.|.||..||
HBB_HUMAN 69 LGAFSDGLAH 78
#=======================================
#
# Aligned_sequences: 2
# 1: HBA_HUMAN
# 2: HBB_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 14
# Extend_penalty: 4
#
# Length: 10
# Identity: 6/10 (60.0%)
# Similarity: 8/10 (80.0%)
# Gaps: 0/10 ( 0.0%)
# Score: 23
#
#
#=======================================
HBA_HUMAN 11 VKAAWGKVGA 20
|:||:.||.|
HBB_HUMAN 127 VQAAYQKVVA 136
#---------------------------------------
#---------------------------------------
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