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METATOOL OUTPUT Version 3.5 (28.03.2001) C:\METATOOL\META35~1.EXE
INPUT FILE: EXAMPLE4.TXT
INTERNAL METABOLITES: 21
REACTIONS: 8
4 external H2O
2 int CO2
2 int NH3
2 int beta-alanine
1 int 3-Oxopropanoate
1 int CoA
1 int NAD(P)+
1 int acetyl-CoA
1 int NAD(P)H
1 int RCH2NH2
1 int O2
1 int RCHO
1 int H2O2
1 int 4-Aminobutanoate
1 int 2-oxoglutarate
1 int succinate_semialdehyde
1 int L-glutamate
1 int Beta-alanyl-L-histidine
1 int L-histidine
1 int N-Carbamoyl-beta-alanine
1 int 5,6-Dihydrouracil
1 int 3-ureidopropionate
22 metabolites, 28 is the summarized frequency
edges frequency of nodes
0 0
1 18
2 3
3 0
4 1
STOICHIOMETRIC MATRIX
matrix dimension r21 x c8
0 0 0 -1 0 0 0 0
0 0 0 -1 0 0 0 0
0 0 0 -1 0 0 0 0
0 0 0 1 0 0 0 0
0 1 0 1 0 0 0 0
0 0 0 1 0 0 0 0
0 0 0 0 -1 0 0 0
0 0 0 0 -1 0 0 0
0 0 0 0 1 0 0 0
0 1 0 0 1 0 0 0
0 0 0 0 1 0 0 0
-1 0 0 0 0 0 0 0
-1 0 0 0 0 0 0 0
1 0 0 0 0 0 0 0
1 0 0 0 0 0 0 0
0 0 0 0 0 -1 0 0
0 1 0 0 0 1 0 0
0 0 0 0 0 1 0 0
0 -1 0 0 0 0 0 0
0 0 -1 0 0 0 0 0
0 0 1 0 0 0 0 0
The following line indicates reversible (0) and irreversible reactions (1)
0 0 0 1 1 1 1 1
rows and columns are sorted as declared in the inputfile
NOT BALANCED INTERNAL METABOLITES
3-Oxopropanoate CoA NAD(P)+ acetyl-CoA NAD(P)H RCH2NH2 O2 RCHO H2O2 4-Aminobutanoate 2-oxoglutarate succinate_semialdehyde L-glutamate Beta-alanyl-L-histidine L-histidine N-Carbamoyl-beta-alanine 5,6-Dihydrouracil 3-ureidopropionate
KERNEL
matrix dimension r2 x c8
0 0 0 0 0 0 1 0
0 0 0 0 0 0 0 1
8 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
enzymes
1: 3.5.1.6 irreversible
2: 3.5.2.2 irreversible
overall reaction
- not found -
The remaining overall reactions perform no net transformation of external metabolites.
SUBSETS OF REACTIONS
matrix dimension r2 x c8
0 0 0 0 0 0 1 0
0 0 0 0 0 0 0 1
8 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
enzymes
1: 3.5.1.6 irreversible
2: 3.5.2.2 irreversible
overall reaction
- not found -
The remaining overall reactions perform no net transformation of external metabolites.
REDUCED SYSTEM with 21 branch point metabolites in 2 reactions (columns)
matrix dimension r0 x c2
The following line indicates reversible (0) and irreversible reactions (1)
1 1
-> Branch metabolites are :
met cons built reactions
-> No branch metabolites are :
met cons built reactions
3-Oxopropanoate 1 0 1 i
CoA 1 0 1 i
NAD(P)+ 1 0 1 i
acetyl-CoA 0 1 1 i
CO2 0 2 2 ir
NAD(P)H 0 1 1 i
RCH2NH2 1 0 1 i
O2 1 0 1 i
RCHO 0 1 1 i
NH3 0 2 2 ir
H2O2 0 1 1 i
4-Aminobutanoate 1 0 1 r
2-oxoglutarate 1 0 1 r
succinate_semialdehyde 0 1 1 r
L-glutamate 0 1 1 r
Beta-alanyl-L-histidine 1 0 1 i
beta-alanine 0 2 2 ir
L-histidine 0 1 1 i
N-Carbamoyl-beta-alanine 1 0 1 r
5,6-Dihydrouracil 1 0 1 r
3-ureidopropionate 0 1 1 r
CONVEX BASIS
matrix dimension r2 x c8
0 0 0 0 0 0 1 0
0 0 0 0 0 0 0 1
enzymes
1: 3.5.1.6 irreversible
2: 3.5.2.2 irreversible
overall reaction
- not found -
The remaining overall reactions perform no net transformation of external metabolites.
CONSERVATION RELATIONS
matrix dimension r15 x c21
1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
1 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
-1 0 0 0 -1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0
-1 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0
1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
1 : 3-Oxopropanoate + CoA = const
2 : 3-Oxopropanoate + NAD(P)+ = const
3 : 3-Oxopropanoate + acetyl-CoA = const
4 : 3-Oxopropanoate + NAD(P)H = const
5 : RCH2NH2 + O2 = const
6 : RCH2NH2 + RCHO = const
7 : 3-Oxopropanoate + CO2 + RCH2NH2 + NH3 = const
8 : RCH2NH2 + H2O2 = const
9 : 4-Aminobutanoate + 2-oxoglutarate = const
10 : 4-Aminobutanoate + succinate_semialdehyde = const
11 : 4-Aminobutanoate + L-glutamate = const
12 : 3-Oxopropanoate + CO2 + Beta-alanyl-L-histidine + beta-alanine = const
13 : Beta-alanyl-L-histidine + L-histidine = const
14 : 3-Oxopropanoate + CO2 + N-Carbamoyl-beta-alanine = const
15 : 5,6-Dihydrouracil + 3-ureidopropionate = const
ELEMENTARY MODES
matrix dimension r2 x c8
0 0 0 0 0 0 1 0
0 0 0 0 0 0 0 1
8 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
enzymes
1: 3.5.1.6 irreversible
2: 3.5.2.2 irreversible
overall reaction
- not found -
The remaining overall reactions perform no net transformation of external metabolites.
The elementary modes ARE EQUAL to convex basis.
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