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#!/usr/bin/env python
"""Test the Location code located in SeqFeature.py
This checks to be sure fuzzy and non-fuzzy representations of locations
are working properly.
"""
from Bio import SeqFeature
# --- test fuzzy representations
print "Testing fuzzy representations..."
# check the positions alone
exact_pos = SeqFeature.ExactPosition(5)
within_pos = SeqFeature.WithinPosition(10, 3)
between_pos = SeqFeature.BetweenPosition(20, 4)
before_pos = SeqFeature.BeforePosition(15)
after_pos = SeqFeature.AfterPosition(40)
print "Exact:", exact_pos
print "Within:", within_pos
print "Between:", between_pos
print "Before:", before_pos
print "After:", after_pos
# put these into Locations
location1 = SeqFeature.FeatureLocation(exact_pos, within_pos)
location2 = SeqFeature.FeatureLocation(before_pos, between_pos)
location3 = SeqFeature.FeatureLocation(within_pos, after_pos)
for location in [location1, location2, location3]:
print "Location:", location
print " Start:", location.start
print " End :", location.end
# --- test non-fuzzy represenations
print "Testing non-fuzzy representations..."
for location in [location1, location2, location3]:
print "Location:", location
print " Non-Fuzzy Start:", location.nofuzzy_start
print " Non-Fuzzy End:", location.nofuzzy_end
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