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# Copyright 2001 by Katharine Lindner. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#!/usr/bin/env python
"""Test the InterPro parser and make sure everything is working smoothly.
"""
# standard library
import os
# Biopython
from Bio import InterPro
test_files = ['IPR001064.htm', 'IPR001171.htm', 'IPR001391.htm',
'IPR001442.htm', 'IPR001571.htm']
# test the parser
record_parser = InterPro.InterProParser()
for test in test_files:
datafile = os.path.join( 'InterPro', test )
src_handle = open( datafile )
data = record_parser.parse( src_handle )
print data
print '\n'
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