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Folder: Tests
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d | rwxr-xr-x | 97 | Abi |
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d | rwxr-xr-x | 82 | Ace |
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d | rwxr-xr-x | 40 | Affy |
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d | rwxr-xr-x | 120 | BWA |
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d | rwxr-xr-x | 95 | BioSQL |
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d | rwxr-xr-x | 8,192 | Blast |
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d | rwxr-xr-x | 4,096 | Blat |
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d | rwxr-xr-x | 30 | CDAO |
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d | rwxr-xr-x | 120 | Clustalw |
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d | rwxr-xr-x | 4,096 | CodonAlign |
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d | rwxr-xr-x | 45 | CodonUsage |
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d | rwxr-xr-x | 36 | Compass |
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d | rwxr-xr-x | 4,096 | EMBL |
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d | rwxr-xr-x | 4,096 | Emboss |
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d | rwxr-xr-x | 4,096 | Entrez |
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d | rwxr-xr-x | 81 | Enzymes |
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d | rwxr-xr-x | 4,096 | Exonerate |
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d | rwxr-xr-x | 34 | ExtendedPhylip |
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d | rwxr-xr-x | 22 | FSSP |
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d | rwxr-xr-x | 4,096 | Fasta |
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d | rwxr-xr-x | 105 | GFF |
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d | rwxr-xr-x | 4,096 | GenBank |
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d | rwxr-xr-x | 4,096 | Geo |
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d | rwxr-xr-x | 27 | Graphics |
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d | rwxr-xr-x | 4,096 | Hmmer |
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d | rwxr-xr-x | 93 | IntelliGenetics |
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d | rwxr-xr-x | 4,096 | KEGG |
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d | rwxr-xr-x | 4,096 | MEME |
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d | rwxr-xr-x | 56 | Medline |
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d | rwxr-xr-x | 4,096 | MetaTool |
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d | rwxr-xr-x | 4,096 | Motif |
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d | rwxr-xr-x | 120 | NBRF |
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d | rwxr-xr-x | 4,096 | NeXML |
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d | rwxr-xr-x | 45 | NeuralNetwork |
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d | rwxr-xr-x | 139 | Nexus |
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d | rwxr-xr-x | 114 | PAML |
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d | rwxr-xr-x | 4,096 | PDB |
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d | rwxr-xr-x | 79 | Phd |
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d | rwxr-xr-x | 4,096 | Phylip |
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d | rwxr-xr-x | 4,096 | PhyloXML |
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d | rwxr-xr-x | 4,096 | PopGen |
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d | rwxr-xr-x | 156 | Prosite |
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d | rwxr-xr-x | 4,096 | Quality |
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d | rwxr-xr-x | 4,096 | Rebase |
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d | rwxr-xr-x | 69 | Registry |
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d | rwxr-xr-x | 4,096 | Roche |
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d | rwxr-xr-x | 145 | SCOP |
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d | rwxr-xr-x | 21 | Saf |
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d | rwxr-xr-x | 4,096 | SamBam |
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d | rwxr-xr-x | 4,096 | SeqXML |
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d | rwxr-xr-x | 39 | Stockholm |
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d | rwxr-xr-x | 4,096 | SubsMat |
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d | rwxr-xr-x | 4,096 | SwissProt |
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d | rwxr-xr-x | 4,096 | TreeConstruction |
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d | rwxr-xr-x | 83 | UniGene |
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d | rwxr-xr-x | 72 | Wise |
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d | rwxr-xr-x | 4,096 | motifs |
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d | rwxr-xr-x | 4,096 | output |
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- | rw-r--r-- | 37,170 | common_BioSQL.py |
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- | rw-r--r-- | 1,216 | requires_internet.py |
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- | rw-r--r-- | 935 | requires_wise.py |
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- | rw-r--r-- | 18,377 | run_tests.py |
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- | rw-r--r-- | 7,074 | search_tests_common.py |
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- | rw-r--r-- | 15,316 | seq_tests_common.py |
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- | rw-r--r-- | 118,131 | test_Ace.py |
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- | rw-r--r-- | 14,774 | test_AlignIO.py |
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- | rw-r--r-- | 2,788 | test_AlignIO_FastaIO.py |
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- | rw-r--r-- | 2,890 | test_AlignIO_convert.py |
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- | rw-r--r-- | 4,170 | test_Application.py |
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- | rw-r--r-- | 6,976 | test_BWA_tool.py |
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- | rw-r--r-- | 1,069 | test_BioSQL_MySQLdb.py |
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- | rw-r--r-- | 1,077 | test_BioSQL_mysql_connector.py |
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- | rw-r--r-- | 1,075 | test_BioSQL_psycopg2.py |
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- | rw-r--r-- | 2,427 | test_BioSQL_sqlite3.py |
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- | rw-r--r-- | 3,776 | test_CAPS.py |
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- | rw-r--r-- | 4,714 | test_CelFile.py |
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- | rw-r--r-- | 1,228 | test_Chi2.py |
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- | rw-r--r-- | 8,767 | test_ClustalOmega_tool.py |
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- | rw-r--r-- | 12,131 | test_Clustalw_tool.py |
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- | rw-r--r-- | 36,287 | test_Cluster.py |
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- | rw-r--r-- | 10,744 | test_CodonAlign.py |
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- | rw-r--r-- | 6,180 | test_CodonTable.py |
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- | rw-r--r-- | 1,201 | test_CodonUsage.py |
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- | rw-r--r-- | 4,186 | test_ColorSpiral.py |
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- | rw-r--r-- | 4,014 | test_Compass.py |
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- | rw-r--r-- | 6,844 | test_Consensus.py |
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- | rw-r--r-- | 16,973 | test_Crystal.py |
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- | rw-r--r-- | 1,392 | test_DSSP_tool.py |
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- | rw-r--r-- | 4,624 | test_Dialign_tool.py |
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- | rw-r--r-- | 255 | test_DocSQL.py |
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- | rw-r--r-- | 41,666 | test_Emboss.py |
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- | rw-r--r-- | 12,767 | test_EmbossPhylipNew.py |
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- | rw-r--r-- | 10,315 | test_EmbossPrimer.py |
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- | rw-r--r-- | 345,114 | test_Entrez.py |
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- | rw-r--r-- | 3,918 | test_Entrez_online.py |
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- | rw-r--r-- | 4,582 | test_Enzyme.py |
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- | rw-r--r-- | 2,015 | test_FSSP.py |
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- | rw-r--r-- | 6,581 | test_Fasttree_tool.py |
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- | rw-r--r-- | 2,590 | test_File.py |
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- | rw-r--r-- | 18,107 | test_GACrossover.py |
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- | rw-r--r-- | 6,732 | test_GAMutation.py |
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- | rw-r--r-- | 5,655 | test_GAOrganism.py |
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- | rw-r--r-- | 14,680 | test_GAQueens.py |
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- | rw-r--r-- | 2,137 | test_GARepair.py |
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- | rw-r--r-- | 6,139 | test_GASelection.py |
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- | rw-r--r-- | 9,510 | test_GenBank.py |
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- | rw-r--r-- | 767 | test_GenBank_unittest.py |
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- | rwxr-xr-x | 43,202 | test_GenomeDiagram.py |
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- | rw-r--r-- | 3,995 | test_GraphicsBitmaps.py |
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- | rw-r--r-- | 38,948 | test_GraphicsChromosome.py |
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- | rw-r--r-- | 2,699 | test_GraphicsDistribution.py |
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- | rw-r--r-- | 3,055 | test_GraphicsGeneral.py |
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- | rw-r--r-- | 6,549 | test_HMMCasino.py |
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- | rw-r--r-- | 16,890 | test_HMMGeneral.py |
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- | rw-r--r-- | 790 | test_KDTree.py |
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- | rw-r--r-- | 2,383 | test_KEGG.py |
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- | rw-r--r-- | 5,145 | test_KeyWList.py |
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- | rw-r--r-- | 1,943 | test_Location.py |
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- | rw-r--r-- | 3,294 | test_LogisticRegression.py |
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- | rw-r--r-- | 5,972 | test_MMCIF.py |
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- | rw-r--r-- | 5,795 | test_MSAProbs_tool.py |
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- | rw-r--r-- | 7,606 | test_Mafft_tool.py |
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- | rw-r--r-- | 11,534 | test_MarkovModel.py |
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- | rw-r--r-- | 16,453 | test_Medline.py |
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- | rw-r--r-- | 99,978 | test_Motif.py |
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- | rw-r--r-- | 16,937 | test_Muscle_tool.py |
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- | rw-r--r-- | 1,259 | test_NACCESS_tool.py |
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- | rw-r--r-- | 1,351,101 | test_NCBITextParser.py |
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- | rw-r--r-- | 97,838 | test_NCBIXML.py |
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- | rw-r--r-- | 15,368 | test_NCBI_BLAST_tools.py |
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- | rw-r--r-- | 5,743 | test_NCBI_qblast.py |
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- | rw-r--r-- | 1,815 | test_NNExclusiveOr.py |
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- | rw-r--r-- | 24,175 | test_NNGene.py |
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- | rw-r--r-- | 3,700 | test_NNGeneral.py |
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- | rwxr-xr-x | 20,939 | test_Nexus.py |
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- | rw-r--r-- | 12,894 | test_PAML_baseml.py |
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- | rw-r--r-- | 24,553 | test_PAML_codeml.py |
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- | rw-r--r-- | 4,922 | test_PAML_tools.py |
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- | rw-r--r-- | 5,600 | test_PAML_yn00.py |
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- | rw-r--r-- | 52,901 | test_PDB.py |
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- | rw-r--r-- | 2,079 | test_PDB_KDTree.py |
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- | rw-r--r-- | 4,710 | test_ParserSupport.py |
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- | rw-r--r-- | 7,505 | test_Pathway.py |
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- | rwxr-xr-x | 19,842 | test_Phd.py |
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- | rw-r--r-- | 18,954 | test_Phylo.py |
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- | rw-r--r-- | 30,326 | test_PhyloXML.py |
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- | rw-r--r-- | 3,303 | test_Phylo_CDAO.py |
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- | rw-r--r-- | 4,051 | test_Phylo_NeXML.py |
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- | rw-r--r-- | 2,833 | test_Phylo_depend.py |
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- | rw-r--r-- | 4,613 | test_PopGen_DFDist.py |
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- | rw-r--r-- | 4,334 | test_PopGen_FDist.py |
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- | rw-r--r-- | 3,538 | test_PopGen_FDist_nodepend.py |
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- | rw-r--r-- | 1,983 | test_PopGen_FastSimCoal.py |
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- | rw-r--r-- | 3,365 | test_PopGen_GenePop.py |
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- | rw-r--r-- | 3,995 | test_PopGen_GenePop_EasyController.py |
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- | rw-r--r-- | 5,264 | test_PopGen_GenePop_nodepend.py |
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- | rw-r--r-- | 2,076 | test_PopGen_SimCoal.py |
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- | rw-r--r-- | 2,066 | test_PopGen_SimCoal_nodepend.py |
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- | rw-r--r-- | 8,442 | test_Prank_tool.py |
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- | rw-r--r-- | 3,805 | test_Probcons_tool.py |
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- | rw-r--r-- | 8,936 | test_ProtParam.py |
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- | rw-r--r-- | 3,991 | test_Restriction.py |
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- | rw-r--r-- | 2,233 | test_SCOP_Astral.py |
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- | rw-r--r-- | 3,689 | test_SCOP_Cla.py |
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- | rw-r--r-- | 1,967 | test_SCOP_Des.py |
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- | rw-r--r-- | 1,858 | test_SCOP_Dom.py |
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- | rw-r--r-- | 1,414 | test_SCOP_Hie.py |
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- | rw-r--r-- | 3,852 | test_SCOP_Raf.py |
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- | rwxr-xr-x | 2,404 | test_SCOP_Residues.py |
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- | rw-r--r-- | 5,661 | test_SCOP_Scop.py |
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- | rw-r--r-- | 637 | test_SCOP_online.py |
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- | rw-r--r-- | 2,039 | test_SVDSuperimposer.py |
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- | rw-r--r-- | 38,749 | test_SearchIO_blast_tab.py |
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- | rw-r--r-- | 9,688 | test_SearchIO_blast_tab_index.py |
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- | rw-r--r-- | 104,807 | test_SearchIO_blast_text.py |
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- | rw-r--r-- | 161,848 | test_SearchIO_blast_xml.py |
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- | rw-r--r-- | 38,083 | test_SearchIO_blast_xml_index.py |
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- | rw-r--r-- | 55,400 | test_SearchIO_blat_psl.py |
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- | rw-r--r-- | 2,602 | test_SearchIO_blat_psl_index.py |
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- | rw-r--r-- | 92,793 | test_SearchIO_exonerate.py |
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- | rw-r--r-- | 956 | test_SearchIO_exonerate_text_index.py |
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- | rw-r--r-- | 969 | test_SearchIO_exonerate_vulgar_index.py |
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- | rw-r--r-- | 134,140 | test_SearchIO_fasta_m10.py |
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- | rw-r--r-- | 2,168 | test_SearchIO_fasta_m10_index.py |
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- | rw-r--r-- | 22,272 | test_SearchIO_hmmer2_text.py |
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- | rw-r--r-- | 23,683 | test_SearchIO_hmmer2_text_index.py |
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- | rw-r--r-- | 27,816 | test_SearchIO_hmmer3_domtab.py |
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- | rw-r--r-- | 5,454 | test_SearchIO_hmmer3_domtab_index.py |
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- | rw-r--r-- | 20,422 | test_SearchIO_hmmer3_tab.py |
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- | rw-r--r-- | 4,499 | test_SearchIO_hmmer3_tab_index.py |
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- | rw-r--r-- | 108,816 | test_SearchIO_hmmer3_text.py |
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- | rw-r--r-- | 18,719 | test_SearchIO_hmmer3_text_index.py |
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- | rw-r--r-- | 61,219 | test_SearchIO_model.py |
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- | rw-r--r-- | 8,410 | test_SearchIO_write.py |
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- | rw-r--r-- | 27,954 | test_SeqIO.py |
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- | rw-r--r-- | 18,108 | test_SeqIO_AbiIO.py |
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- | rw-r--r-- | 6,397 | test_SeqIO_FastaIO.py |
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- | rw-r--r-- | 2,199 | test_SeqIO_Insdc.py |
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- | rw-r--r-- | 4,600 | test_SeqIO_PdbIO.py |
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- | rw-r--r-- | 36,060 | test_SeqIO_QualityIO.py |
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- | rw-r--r-- | 7,666 | test_SeqIO_SeqXML.py |
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- | rw-r--r-- | 10,901 | test_SeqIO_convert.py |
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- | rw-r--r-- | 56,689 | test_SeqIO_features.py |
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- | rw-r--r-- | 19,105 | test_SeqIO_index.py |
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- | rw-r--r-- | 3,249 | test_SeqIO_online.py |
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- | rw-r--r-- | 8,125 | test_SeqIO_write.py |
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- | rw-r--r-- | 11,099 | test_SeqRecord.py |
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- | rw-r--r-- | 7,025 | test_SeqUtils.py |
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- | rw-r--r-- | 24,877 | test_Seq_objs.py |
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- | rw-r--r-- | 5,196 | test_SffIO.py |
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- | rw-r--r-- | 3,375 | test_SubsMat.py |
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- | rw-r--r-- | 101,979 | test_SwissProt.py |
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- | rw-r--r-- | 4,552 | test_TCoffee_tool.py |
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- | rw-r--r-- | 23,324 | test_TogoWS.py |
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- | rw-r--r-- | 11,450 | test_TreeConstruction.py |
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- | rw-r--r-- | 6,507 | test_Tutorial.py |
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- | rw-r--r-- | 68,376 | test_UniGene.py |
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- | rw-r--r-- | 20,892 | test_Uniprot.py |
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- | rwxr-xr-x | 2,613 | test_Wise.py |
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- | rw-r--r-- | 6,381 | test_XXmotif_tool.py |
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- | rw-r--r-- | 6,745 | test_align.py |
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- | rw-r--r-- | 16,016 | test_bgzf.py |
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- | rw-r--r-- | 1,235 | test_geo.py |
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- | rw-r--r-- | 3,517 | test_kNN.py |
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- | rwxr-xr-x | 1,114 | test_lowess.py |
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- | rw-r--r-- | 103,825 | test_motifs.py |
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- | rw-r--r-- | 12,559 | test_pairwise2.py |
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- | rw-r--r-- | 2,004 | test_phyml_tool.py |
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- | rw-r--r-- | 54,568 | test_prodoc.py |
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- | rw-r--r-- | 196,951 | test_prosite1.py |
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- | rw-r--r-- | 54,446 | test_prosite2.py |
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- | rwxr-xr-x | 4,732 | test_psw.py |
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- | rw-r--r-- | 752 | test_py3k.py |
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- | rw-r--r-- | 2,408 | test_raxml_tool.py |
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- | rw-r--r-- | 9,951 | test_samtools_tool.py |
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- | rw-r--r-- | 23,931 | test_seq.py |
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- | rw-r--r-- | 3,547 | test_translate.py |
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- | rw-r--r-- | 6,295 | test_trie.py |