1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
|
# MANIFEST.in
#
# This tells distutils what files to distribute.
include CONTRIB
include LICENSE
include NEWS
include README
include DEPRECATED
include MANIFEST.in
recursive-include Scripts * # Include scripts.
recursive-include Tests * # Include regression tests.
recursive-include Bio *.c # Include all .c files.
recursive-include Bio *.h # Include headers to compile .c files.
recursive-include Doc *.tex # Include relevant documentation.
recursive-include Doc *.pdf
recursive-include Doc *.py
recursive-include Doc *.html
recursive-include Doc *.fasta
recursive-include Doc Makefile
recursive-include Doc/examples *.aln
recursive-include Doc/examples *.xpk
recursive-include Doc/examples *.gbk
recursive-include Doc/examples *.sth
recursive-include Doc/examples *.bgz
recursive-include Doc/examples *.xml
recursive-include Doc/examples *.psl
recursive-include Doc/examples *.dnd
recursive-include Doc/images *.png
recursive-include Doc/images *.jpg # e.g. the logo for the Tutorial
# Include Bio.Cluster, Bio.Affy and Bio.KDTree
# Note setup.py will only install these if Numpy is installed.
recursive-include Bio/Cluster *.py
recursive-include Bio/Affy *.py
recursive-include Bio/KDTree *.py
exclude Tests/Graphics/* # Exclude test files generated by reportlab.
include Tests/Graphics/README # But include README file to make directory!
recursive-exclude * .cvsignore
recursive-exclude * *.pyc # e.g. from running the unit tests
# Make sure the required data files are included.
include Bio/Entrez/DTDs/*.dtd # Include DTD files for Entrez
include Bio/Entrez/DTDs/*.ent # Include DTD files for Entrez
include Bio/Entrez/DTDs/*.mod # Include DTD files for Entrez
include Bio/PopGen/SimCoal/data/*.par # Include SimCoal data files
|
