File: requires_wise.py

package info (click to toggle)
python-biopython 1.64%2Bdfsg-5
  • links: PTS, VCS
  • area: main
  • in suites: jessie, jessie-kfreebsd
  • size: 44,416 kB
  • ctags: 12,472
  • sloc: python: 153,759; xml: 67,286; ansic: 9,003; sql: 1,488; makefile: 144; sh: 59
file content (24 lines) | stat: -rw-r--r-- 935 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
#!/usr/bin/env python

# Copyright 2004 by Michael Hoffman.  All rights reserved.  This code is
# part of the Biopython distribution and governed by its license.
# Please see the LICENSE file that should have been included as part
# of this package.

from Bio import MissingExternalDependencyError
import sys
if sys.platform=="win32":
    #Someone needs to find out if dnal works nicely on windows,
    #and if so where it is typically installed.
    raise MissingExternalDependencyError(
        "Don't know how to find the Wise2 tool dnal on Windows.")

from Bio._py3k import getoutput
not_found_types = ["command not found", "dnal: not found", "not recognized"]
dnal_output = getoutput("dnal")

for not_found in not_found_types:
    if not_found in dnal_output:
        #raise MissingExternalDependencyError(dnal_output)
        raise MissingExternalDependencyError(
            "Install Wise2 (dnal) if you want to use Bio.Wise.")