File: NCBI_Biblio.mod.dtd

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<!-- ============================================
     ::DATATOOL:: Generated from "biblio.asn"
     ::DATATOOL:: by application DATATOOL version 2.0.0
     ::DATATOOL:: on 12/20/2010 23:04:52
     ============================================ -->

<!-- ============================================ -->
<!-- This section is mapped from module "NCBI-Biblio"
================================================= -->

<!--
$Revision: 217677 $
****************************************************************

  NCBI Bibliographic data elements
  by James Ostell, 1990

  Taken from the American National Standard for
      Bibliographic References
      ANSI Z39.29-1977
  Version 3.0 - June 1994
  PubMedId added in 1996
  ArticleIds and eprint elements added in 1999

****************************************************************
-->

<!-- Elements used by other modules:
          Cit-art,
          Cit-jour,
          Cit-book,
          Cit-pat,
          Cit-let,
          Id-pat,
          Cit-gen,
          Cit-proc,
          Cit-sub,
          Title,
          Author,
          PubMedId,
          DOI -->

<!-- Elements referenced from other modules:
          Person-id,
          Date,
          Dbtag FROM NCBI-General -->
<!-- ============================================ -->

<!--
 Article Ids
 can be many ids for an article
-->
<!ELEMENT ArticleId (
        ArticleId_pubmed | 
        ArticleId_medline | 
        ArticleId_doi | 
        ArticleId_pii | 
        ArticleId_pmcid | 
        ArticleId_pmcpid | 
        ArticleId_pmpid | 
        ArticleId_other)>

<!-- see types below -->
<!ELEMENT ArticleId_pubmed (PubMedId)>
<!-- Id from MEDLINE -->
<!ELEMENT ArticleId_medline (MedlineUID)>
<!-- Document Object Identifier -->
<!ELEMENT ArticleId_doi (DOI)>
<!-- Controlled Publisher Identifier -->
<!ELEMENT ArticleId_pii (PII)>
<!-- PubMed Central Id -->
<!ELEMENT ArticleId_pmcid (PmcID)>
<!-- Publisher Id supplied to PubMed Central -->
<!ELEMENT ArticleId_pmcpid (PmcPid)>
<!-- Publisher Id supplied to PubMed -->
<!ELEMENT ArticleId_pmpid (PmPid)>

<!-- generic catch all -->
<!ELEMENT ArticleId_other (Dbtag)>

<!-- Id from the PubMed database at NCBI -->
<!ELEMENT PubMedId (%INTEGER;)>

<!-- Id from MEDLINE -->
<!ELEMENT MedlineUID (%INTEGER;)>

<!-- Document Object Identifier -->
<!ELEMENT DOI (#PCDATA)>

<!-- Controlled Publisher Identifier -->
<!ELEMENT PII (#PCDATA)>

<!-- PubMed Central Id -->
<!ELEMENT PmcID (%INTEGER;)>

<!-- Publisher Id supplied to PubMed Central -->
<!ELEMENT PmcPid (#PCDATA)>

<!-- Publisher Id supplied to PubMed -->
<!ELEMENT PmPid (#PCDATA)>


<!ELEMENT ArticleIdSet (ArticleId*)>

<!--
 Status Dates
 points of publication
-->
<!ELEMENT PubStatus (%INTEGER;)>

<!--
    received	-  date manuscript received for review
    accepted	-  accepted for publication
    epublish	-  published electronically by publisher
    ppublish	-  published in print by publisher
    revised	-  article revised by publisher/author
    pmc	-  article first appeared in PubMed Central
    pmcr	-  article revision in PubMed Central
    pubmed	-  article citation first appeared in PubMed
    pubmedr	-  article citation revision in PubMed
    aheadofprint	-  epublish, but will be followed by print
    premedline	-  date into PreMedline status
    medline	-  date made a MEDLINE record
-->
<!ATTLIST PubStatus value (
        received |
        accepted |
        epublish |
        ppublish |
        revised |
        pmc |
        pmcr |
        pubmed |
        pubmedr |
        aheadofprint |
        premedline |
        medline |
        other
        ) #IMPLIED >


<!-- done as a structure so fields can be added -->
<!ELEMENT PubStatusDate (
        PubStatusDate_pubstatus, 
        PubStatusDate_date)>
<!--
 Status Dates
 points of publication
-->
<!ELEMENT PubStatusDate_pubstatus (PubStatus)>

<!-- time may be added later -->
<!ELEMENT PubStatusDate_date (Date)>


<!ELEMENT PubStatusDateSet (PubStatusDate*)>

<!--
 Citation Types
 article in journal or book
-->
<!ELEMENT Cit-art (
        Cit-art_title?, 
        Cit-art_authors?, 
        Cit-art_from, 
        Cit-art_ids?)>

<!-- title of paper (ANSI requires) -->
<!ELEMENT Cit-art_title (Title)>

<!-- authors (ANSI requires) -->
<!ELEMENT Cit-art_authors (Auth-list)>
<!-- journal or book -->
<!ELEMENT Cit-art_from (
        Cit-art_from_journal | 
        Cit-art_from_book | 
        Cit-art_from_proc)>
<!-- Journal citation -->
<!ELEMENT Cit-art_from_journal (Cit-jour)>
<!-- Book citation -->
<!ELEMENT Cit-art_from_book (Cit-book)>
<!-- Meeting proceedings -->
<!ELEMENT Cit-art_from_proc (Cit-proc)>

<!-- lots of ids -->
<!ELEMENT Cit-art_ids (ArticleIdSet)>

<!-- Journal citation -->
<!ELEMENT Cit-jour (
        Cit-jour_title, 
        Cit-jour_imp)>

<!-- title of journal -->
<!ELEMENT Cit-jour_title (Title)>
<!-- Imprint group -->
<!ELEMENT Cit-jour_imp (Imprint)>

<!-- Book citation -->
<!ELEMENT Cit-book (
        Cit-book_title, 
        Cit-book_coll?, 
        Cit-book_authors, 
        Cit-book_imp)>

<!-- Title of book -->
<!ELEMENT Cit-book_title (Title)>

<!-- part of a collection -->
<!ELEMENT Cit-book_coll (Title)>

<!-- authors -->
<!ELEMENT Cit-book_authors (Auth-list)>
<!-- Imprint group -->
<!ELEMENT Cit-book_imp (Imprint)>

<!-- Meeting proceedings -->
<!ELEMENT Cit-proc (
        Cit-proc_book, 
        Cit-proc_meet)>

<!-- citation to meeting -->
<!ELEMENT Cit-proc_book (Cit-book)>

<!-- time and location of meeting -->
<!ELEMENT Cit-proc_meet (Meeting)>

<!--
 Patent number and date-issue were made optional in 1997 to
   support patent applications being issued from the USPTO
   Semantically a Cit-pat must have either a patent number or
   an application number (or both) to be valid
 patent citation
-->
<!ELEMENT Cit-pat (
        Cit-pat_title, 
        Cit-pat_authors, 
        Cit-pat_country, 
        Cit-pat_doc-type, 
        Cit-pat_number?, 
        Cit-pat_date-issue?, 
        Cit-pat_class?, 
        Cit-pat_app-number?, 
        Cit-pat_app-date?, 
        Cit-pat_applicants?, 
        Cit-pat_assignees?, 
        Cit-pat_priority?, 
        Cit-pat_abstract?)>

<!ELEMENT Cit-pat_title (#PCDATA)>

<!-- author/inventor -->
<!ELEMENT Cit-pat_authors (Auth-list)>

<!-- Patent Document Country -->
<!ELEMENT Cit-pat_country (#PCDATA)>

<!-- Patent Document Type -->
<!ELEMENT Cit-pat_doc-type (#PCDATA)>

<!-- Patent Document Number -->
<!ELEMENT Cit-pat_number (#PCDATA)>

<!-- Patent Issue/Pub Date -->
<!ELEMENT Cit-pat_date-issue (Date)>

<!-- Patent Doc Class Code  -->
<!ELEMENT Cit-pat_class (Cit-pat_class_E*)>


<!ELEMENT Cit-pat_class_E (#PCDATA)>

<!-- Patent Doc Appl Number -->
<!ELEMENT Cit-pat_app-number (#PCDATA)>

<!-- Patent Appl File Date -->
<!ELEMENT Cit-pat_app-date (Date)>

<!-- Applicants -->
<!ELEMENT Cit-pat_applicants (Auth-list)>

<!-- Assignees -->
<!ELEMENT Cit-pat_assignees (Auth-list)>

<!-- Priorities -->
<!ELEMENT Cit-pat_priority (Patent-priority*)>

<!-- abstract of patent -->
<!ELEMENT Cit-pat_abstract (#PCDATA)>


<!ELEMENT Patent-priority (
        Patent-priority_country, 
        Patent-priority_number, 
        Patent-priority_date)>

<!-- Patent country code -->
<!ELEMENT Patent-priority_country (#PCDATA)>

<!-- number assigned in that country -->
<!ELEMENT Patent-priority_number (#PCDATA)>

<!-- date of application -->
<!ELEMENT Patent-priority_date (Date)>

<!-- just to identify a patent -->
<!ELEMENT Id-pat (
        Id-pat_country, 
        Id-pat_id, 
        Id-pat_doc-type?)>

<!-- Patent Document Country -->
<!ELEMENT Id-pat_country (#PCDATA)>

<!ELEMENT Id-pat_id (
        Id-pat_id_number | 
        Id-pat_id_app-number)>

<!-- Patent Document Number -->
<!ELEMENT Id-pat_id_number (#PCDATA)>

<!-- Patent Doc Appl Number -->
<!ELEMENT Id-pat_id_app-number (#PCDATA)>

<!-- Patent Doc Type -->
<!ELEMENT Id-pat_doc-type (#PCDATA)>

<!-- letter, thesis, or manuscript -->
<!ELEMENT Cit-let (
        Cit-let_cit, 
        Cit-let_man-id?, 
        Cit-let_type?)>

<!-- same fields as a book -->
<!ELEMENT Cit-let_cit (Cit-book)>

<!-- Manuscript identifier -->
<!ELEMENT Cit-let_man-id (#PCDATA)>

<!ELEMENT Cit-let_type %ENUM;>
<!ATTLIST Cit-let_type value (
        manuscript |
        letter |
        thesis
        ) #REQUIRED >


<!--
 NOTE: this is just to cite a
 direct data submission, see NCBI-Submit
 for the form of a sequence submission
 citation for a direct submission
-->
<!ELEMENT Cit-sub (
        Cit-sub_authors, 
        Cit-sub_imp?, 
        Cit-sub_medium?, 
        Cit-sub_date?, 
        Cit-sub_descr?)>

<!-- not necessarily authors of the paper -->
<!ELEMENT Cit-sub_authors (Auth-list)>

<!-- this only used to get date.. will go -->
<!ELEMENT Cit-sub_imp (Imprint)>
<!-- medium of submission -->
<!ELEMENT Cit-sub_medium %ENUM;>
<!ATTLIST Cit-sub_medium value (
        paper |
        tape |
        floppy |
        email |
        other
        ) #REQUIRED >


<!-- replaces imp, will become required -->
<!ELEMENT Cit-sub_date (Date)>

<!-- description of changes for public view -->
<!ELEMENT Cit-sub_descr (#PCDATA)>

<!-- NOT from ANSI, this is a catchall -->
<!ELEMENT Cit-gen (
        Cit-gen_cit?, 
        Cit-gen_authors?, 
        Cit-gen_muid?, 
        Cit-gen_journal?, 
        Cit-gen_volume?, 
        Cit-gen_issue?, 
        Cit-gen_pages?, 
        Cit-gen_date?, 
        Cit-gen_serial-number?, 
        Cit-gen_title?, 
        Cit-gen_pmid?)>

<!-- anything, not parsable -->
<!ELEMENT Cit-gen_cit (#PCDATA)>
<!-- Authorship Group -->
<!ELEMENT Cit-gen_authors (Auth-list)>

<!-- medline uid -->
<!ELEMENT Cit-gen_muid (%INTEGER;)>
<!--
 Title Group
 Valid for = A = Analytic (Cit-art)
             J = Journals (Cit-jour)
             B = Book (Cit-book)
 Valid for:
-->
<!ELEMENT Cit-gen_journal (Title)>

<!ELEMENT Cit-gen_volume (#PCDATA)>

<!ELEMENT Cit-gen_issue (#PCDATA)>

<!ELEMENT Cit-gen_pages (#PCDATA)>

<!ELEMENT Cit-gen_date (Date)>

<!-- for GenBank style references -->
<!ELEMENT Cit-gen_serial-number (%INTEGER;)>

<!-- eg. cit="unpublished",title="title" -->
<!ELEMENT Cit-gen_title (#PCDATA)>

<!-- PubMed Id -->
<!ELEMENT Cit-gen_pmid (PubMedId)>

<!-- Authorship Group -->
<!ELEMENT Auth-list (
        Auth-list_names, 
        Auth-list_affil?)>

<!ELEMENT Auth-list_names (
        Auth-list_names_std | 
        Auth-list_names_ml | 
        Auth-list_names_str)>

<!-- full citations -->
<!ELEMENT Auth-list_names_std (Author*)>

<!-- MEDLINE, semi-structured -->
<!ELEMENT Auth-list_names_ml (Auth-list_names_ml_E*)>


<!ELEMENT Auth-list_names_ml_E (#PCDATA)>

<!-- free for all -->
<!ELEMENT Auth-list_names_str (Auth-list_names_str_E*)>


<!ELEMENT Auth-list_names_str_E (#PCDATA)>

<!-- author affiliation -->
<!ELEMENT Auth-list_affil (Affil)>


<!ELEMENT Author (
        Author_name, 
        Author_level?, 
        Author_role?, 
        Author_affil?, 
        Author_is-corr?)>

<!-- Author, Primary or Secondary -->
<!ELEMENT Author_name (Person-id)>

<!ELEMENT Author_level %ENUM;>
<!ATTLIST Author_level value (
        primary |
        secondary
        ) #REQUIRED >

<!-- Author Role Indicator -->
<!ELEMENT Author_role %ENUM;>
<!ATTLIST Author_role value (
        compiler |
        editor |
        patent-assignee |
        translator
        ) #REQUIRED >


<!ELEMENT Author_affil (Affil)>

<!-- TRUE if corresponding author -->
<!ELEMENT Author_is-corr EMPTY>
<!ATTLIST Author_is-corr value ( true | false ) #REQUIRED >



<!ELEMENT Affil (
        Affil_str | 
        Affil_std)>

<!-- unparsed string -->
<!ELEMENT Affil_str (#PCDATA)>
<!-- std representation -->
<!ELEMENT Affil_std (
        Affil_std_affil?, 
        Affil_std_div?, 
        Affil_std_city?, 
        Affil_std_sub?, 
        Affil_std_country?, 
        Affil_std_street?, 
        Affil_std_email?, 
        Affil_std_fax?, 
        Affil_std_phone?, 
        Affil_std_postal-code?)>

<!-- Author Affiliation, Name -->
<!ELEMENT Affil_std_affil (#PCDATA)>

<!-- Author Affiliation, Division -->
<!ELEMENT Affil_std_div (#PCDATA)>

<!-- Author Affiliation, City -->
<!ELEMENT Affil_std_city (#PCDATA)>

<!-- Author Affiliation, County Sub -->
<!ELEMENT Affil_std_sub (#PCDATA)>

<!-- Author Affiliation, Country -->
<!ELEMENT Affil_std_country (#PCDATA)>

<!-- street address, not ANSI -->
<!ELEMENT Affil_std_street (#PCDATA)>

<!ELEMENT Affil_std_email (#PCDATA)>

<!ELEMENT Affil_std_fax (#PCDATA)>

<!ELEMENT Affil_std_phone (#PCDATA)>

<!ELEMENT Affil_std_postal-code (#PCDATA)>

<!--
 Title Group
 Valid for = A = Analytic (Cit-art)
             J = Journals (Cit-jour)
             B = Book (Cit-book)
 Valid for:
-->
<!ELEMENT Title (Title_E*)>



<!ELEMENT Title_E (
        Title_E_name | 
        Title_E_tsub | 
        Title_E_trans | 
        Title_E_jta | 
        Title_E_iso-jta | 
        Title_E_ml-jta | 
        Title_E_coden | 
        Title_E_issn | 
        Title_E_abr | 
        Title_E_isbn)>

<!-- Title, Anal,Coll,Mono    AJB -->
<!ELEMENT Title_E_name (#PCDATA)>

<!-- Title, Subordinate       A B -->
<!ELEMENT Title_E_tsub (#PCDATA)>

<!-- Title, Translated        AJB -->
<!ELEMENT Title_E_trans (#PCDATA)>

<!-- Title, Abbreviated        J -->
<!ELEMENT Title_E_jta (#PCDATA)>

<!-- specifically ISO jta      J -->
<!ELEMENT Title_E_iso-jta (#PCDATA)>

<!-- specifically MEDLINE jta  J -->
<!ELEMENT Title_E_ml-jta (#PCDATA)>

<!-- a coden                   J -->
<!ELEMENT Title_E_coden (#PCDATA)>

<!-- ISSN                      J -->
<!ELEMENT Title_E_issn (#PCDATA)>

<!-- Title, Abbreviated         B -->
<!ELEMENT Title_E_abr (#PCDATA)>

<!-- ISBN                       B -->
<!ELEMENT Title_E_isbn (#PCDATA)>

<!-- Imprint group -->
<!ELEMENT Imprint (
        Imprint_date, 
        Imprint_volume?, 
        Imprint_issue?, 
        Imprint_pages?, 
        Imprint_section?, 
        Imprint_pub?, 
        Imprint_cprt?, 
        Imprint_part-sup?, 
        Imprint_language?, 
        Imprint_prepub?, 
        Imprint_part-supi?, 
        Imprint_retract?, 
        Imprint_pubstatus?, 
        Imprint_history?)>

<!-- date of publication -->
<!ELEMENT Imprint_date (Date)>

<!ELEMENT Imprint_volume (#PCDATA)>

<!ELEMENT Imprint_issue (#PCDATA)>

<!ELEMENT Imprint_pages (#PCDATA)>

<!ELEMENT Imprint_section (#PCDATA)>

<!-- publisher, required for book -->
<!ELEMENT Imprint_pub (Affil)>

<!-- copyright date, "    "   " -->
<!ELEMENT Imprint_cprt (Date)>

<!-- part/sup of volume -->
<!ELEMENT Imprint_part-sup (#PCDATA)>

<!-- put here for simplicity -->
<!ELEMENT Imprint_language (#PCDATA)>
<!-- for prepublication citations -->
<!ELEMENT Imprint_prepub %ENUM;>

<!--
    submitted	-  submitted, not accepted
    in-press	-  accepted, not published
-->
<!ATTLIST Imprint_prepub value (
        submitted |
        in-press |
        other
        ) #REQUIRED >


<!-- part/sup on issue -->
<!ELEMENT Imprint_part-supi (#PCDATA)>

<!-- retraction info -->
<!ELEMENT Imprint_retract (CitRetract)>

<!-- current status of this publication -->
<!ELEMENT Imprint_pubstatus (PubStatus)>

<!-- dates for this record -->
<!ELEMENT Imprint_history (PubStatusDateSet)>


<!ELEMENT CitRetract (
        CitRetract_type, 
        CitRetract_exp?)>
<!-- retraction of an entry -->
<!ELEMENT CitRetract_type %ENUM;>

<!--
    retracted	-  this citation retracted
    notice	-  this citation is a retraction notice
    in-error	-  an erratum was published about this
    erratum	-  this is a published erratum
-->
<!ATTLIST CitRetract_type value (
        retracted |
        notice |
        in-error |
        erratum
        ) #REQUIRED >


<!-- citation and/or explanation -->
<!ELEMENT CitRetract_exp (#PCDATA)>


<!ELEMENT Meeting (
        Meeting_number, 
        Meeting_date, 
        Meeting_place?)>

<!ELEMENT Meeting_number (#PCDATA)>

<!ELEMENT Meeting_date (Date)>

<!ELEMENT Meeting_place (Affil)>