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<!-- ============================================
::DATATOOL:: Generated from "biotree.asn"
::DATATOOL:: by application DATATOOL version 2.0.0
::DATATOOL:: on 08/02/2010 23:05:14
============================================ -->
<!-- ============================================ -->
<!-- This section is mapped from module "NCBI-BioTree"
================================================= -->
<!--
$Revision: 184613 $
*********************************************************************
biotree.asn
BioTree ASN
Anatoliy Kuznetsov
*********************************************************************
-->
<!-- Elements used by other modules:
BioTreeContainer,
DistanceMatrix -->
<!-- ============================================ -->
<!ELEMENT BioTreeContainer (
BioTreeContainer_treetype?,
BioTreeContainer_fdict,
BioTreeContainer_nodes,
BioTreeContainer_label?)>
<!-- hint on what kind of tree is that -->
<!ELEMENT BioTreeContainer_treetype (#PCDATA)>
<!-- features dictionary -->
<!ELEMENT BioTreeContainer_fdict (FeatureDictSet)>
<!-- set of nodes with encoded topology -->
<!ELEMENT BioTreeContainer_nodes (NodeSet)>
<!-- bio-tree label (short name) -->
<!ELEMENT BioTreeContainer_label (#PCDATA)>
<!ELEMENT NodeSet (Node*)>
<!ELEMENT Node (
Node_id,
Node_parent?,
Node_features?)>
<!-- node uid -->
<!ELEMENT Node_id (%INTEGER;)>
<!-- parent node id -->
<!ELEMENT Node_parent (%INTEGER;)>
<!ELEMENT Node_features (NodeFeatureSet)>
<!ELEMENT NodeFeatureSet (NodeFeature*)>
<!ELEMENT NodeFeature (
NodeFeature_featureid,
NodeFeature_value)>
<!ELEMENT NodeFeature_featureid (%INTEGER;)>
<!ELEMENT NodeFeature_value (#PCDATA)>
<!ELEMENT FeatureDictSet (FeatureDescr*)>
<!ELEMENT FeatureDescr (
FeatureDescr_id,
FeatureDescr_name)>
<!-- feature id -->
<!ELEMENT FeatureDescr_id (%INTEGER;)>
<!-- feature name -->
<!ELEMENT FeatureDescr_name (#PCDATA)>
<!ELEMENT DistanceMatrix (
DistanceMatrix_labels,
DistanceMatrix_distances)>
<!-- n labels -->
<!ELEMENT DistanceMatrix_labels (DistanceMatrix_labels_E*)>
<!ELEMENT DistanceMatrix_labels_E (#PCDATA)>
<!--
n(n-1)/2 pairwise distances
(0, 1)...(0, n), (1, 2)...(1, n)...
-->
<!ELEMENT DistanceMatrix_distances (DistanceMatrix_distances_E*)>
<!ELEMENT DistanceMatrix_distances_E (%REAL;)>
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