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<!-- ============================================
::DATATOOL:: Generated from "seqfeat.asn"
::DATATOOL:: by application DATATOOL version 2.0.0
::DATATOOL:: on 07/07/2010 23:05:04
============================================ -->
<!-- ============================================ -->
<!-- This section is mapped from module "NCBI-Organism"
================================================= -->
<!--
**********************************************************************
NCBI Organism
by James Ostell, 1994
version 3.0
**********************************************************************
-->
<!-- Elements used by other modules:
Org-ref -->
<!-- Elements referenced from other modules:
Dbtag FROM NCBI-General -->
<!-- ============================================ -->
<!--
*** Org-ref ***********************************************
*
* Reference to an organism
* defines only the organism.. lower levels of detail for biological
* molecules are provided by the Source object
*
-->
<!ELEMENT Org-ref (
Org-ref_taxname?,
Org-ref_common?,
Org-ref_mod?,
Org-ref_db?,
Org-ref_syn?,
Org-ref_orgname?)>
<!-- preferred formal name -->
<!ELEMENT Org-ref_taxname (#PCDATA)>
<!-- common name -->
<!ELEMENT Org-ref_common (#PCDATA)>
<!-- unstructured modifiers -->
<!ELEMENT Org-ref_mod (Org-ref_mod_E*)>
<!ELEMENT Org-ref_mod_E (#PCDATA)>
<!-- ids in taxonomic or culture dbases -->
<!ELEMENT Org-ref_db (Dbtag*)>
<!-- synonyms for taxname or common -->
<!ELEMENT Org-ref_syn (Org-ref_syn_E*)>
<!ELEMENT Org-ref_syn_E (#PCDATA)>
<!ELEMENT Org-ref_orgname (OrgName)>
<!ELEMENT OrgName (
OrgName_name?,
OrgName_attrib?,
OrgName_mod?,
OrgName_lineage?,
OrgName_gcode?,
OrgName_mgcode?,
OrgName_div?,
OrgName_pgcode?)>
<!ELEMENT OrgName_name (
OrgName_name_binomial |
OrgName_name_virus |
OrgName_name_hybrid |
OrgName_name_namedhybrid |
OrgName_name_partial)>
<!-- genus/species type name -->
<!ELEMENT OrgName_name_binomial (BinomialOrgName)>
<!-- virus names are different -->
<!ELEMENT OrgName_name_virus (#PCDATA)>
<!-- hybrid between organisms -->
<!ELEMENT OrgName_name_hybrid (MultiOrgName)>
<!-- some hybrids have genus x species name -->
<!ELEMENT OrgName_name_namedhybrid (BinomialOrgName)>
<!-- when genus not known -->
<!ELEMENT OrgName_name_partial (PartialOrgName)>
<!-- attribution of name -->
<!ELEMENT OrgName_attrib (#PCDATA)>
<!ELEMENT OrgName_mod (OrgMod*)>
<!-- lineage with semicolon separators -->
<!ELEMENT OrgName_lineage (#PCDATA)>
<!-- genetic code (see CdRegion) -->
<!ELEMENT OrgName_gcode (%INTEGER;)>
<!-- mitochondrial genetic code -->
<!ELEMENT OrgName_mgcode (%INTEGER;)>
<!-- GenBank division code -->
<!ELEMENT OrgName_div (#PCDATA)>
<!-- plastid genetic code -->
<!ELEMENT OrgName_pgcode (%INTEGER;)>
<!ELEMENT OrgMod (
OrgMod_subtype,
OrgMod_subname,
OrgMod_attrib?)>
<!ELEMENT OrgMod_subtype (%INTEGER;)>
<!--
dosage - chromosome dosage of hybrid
nat-host - natural host of this specimen
gb-acronym - used by taxonomy database
gb-anamorph - used by taxonomy database
gb-synonym - used by taxonomy database
other - ASN5: old-name (254) will be added to next spec
-->
<!ATTLIST OrgMod_subtype value (
strain |
substrain |
type |
subtype |
variety |
serotype |
serogroup |
serovar |
cultivar |
pathovar |
chemovar |
biovar |
biotype |
group |
subgroup |
isolate |
common |
acronym |
dosage |
nat-host |
sub-species |
specimen-voucher |
authority |
forma |
forma-specialis |
ecotype |
synonym |
anamorph |
teleomorph |
breed |
gb-acronym |
gb-anamorph |
gb-synonym |
culture-collection |
bio-material |
metagenome-source |
old-lineage |
old-name |
other
) #IMPLIED >
<!ELEMENT OrgMod_subname (#PCDATA)>
<!-- attribution/source of name -->
<!ELEMENT OrgMod_attrib (#PCDATA)>
<!ELEMENT BinomialOrgName (
BinomialOrgName_genus,
BinomialOrgName_species?,
BinomialOrgName_subspecies?)>
<!-- required -->
<!ELEMENT BinomialOrgName_genus (#PCDATA)>
<!-- species required if subspecies used -->
<!ELEMENT BinomialOrgName_species (#PCDATA)>
<!ELEMENT BinomialOrgName_subspecies (#PCDATA)>
<!-- the first will be used to assign division -->
<!ELEMENT MultiOrgName (OrgName*)>
<!-- when we don't know the genus -->
<!ELEMENT PartialOrgName (TaxElement*)>
<!ELEMENT TaxElement (
TaxElement_fixed-level,
TaxElement_level?,
TaxElement_name)>
<!ELEMENT TaxElement_fixed-level (%INTEGER;)>
<!--
other - level must be set in string
-->
<!ATTLIST TaxElement_fixed-level value (
other |
family |
order |
class
) #IMPLIED >
<!ELEMENT TaxElement_level (#PCDATA)>
<!ELEMENT TaxElement_name (#PCDATA)>
|
