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<!-- ============================================
::DATATOOL:: Generated from "seqfeat.asn"
::DATATOOL:: by application DATATOOL version 2.0.0
::DATATOOL:: on 04/26/2010 23:04:43
============================================ -->
<!-- ============================================ -->
<!-- This section is mapped from module "NCBI-TxInit"
================================================= -->
<!--
********************************************************************
Transcription Initiation Site Feature Data Block
James Ostell, 1991
Philip Bucher, David Ghosh
version 1.1
********************************************************************
-->
<!-- Elements used by other modules:
Txinit -->
<!-- Elements referenced from other modules:
Gene-ref FROM NCBI-Gene,
Prot-ref FROM NCBI-Protein,
Org-ref FROM NCBI-Organism -->
<!-- ============================================ -->
<!ELEMENT Txinit (
Txinit_name,
Txinit_syn?,
Txinit_gene?,
Txinit_protein?,
Txinit_rna?,
Txinit_expression?,
Txinit_txsystem,
Txinit_txdescr?,
Txinit_txorg?,
Txinit_mapping-precise?,
Txinit_location-accurate?,
Txinit_inittype?,
Txinit_evidence?)>
<!-- descriptive name of initiation site -->
<!ELEMENT Txinit_name (#PCDATA)>
<!-- synonyms -->
<!ELEMENT Txinit_syn (Txinit_syn_E*)>
<!ELEMENT Txinit_syn_E (#PCDATA)>
<!-- gene(s) transcribed -->
<!ELEMENT Txinit_gene (Gene-ref*)>
<!-- protein(s) produced -->
<!ELEMENT Txinit_protein (Prot-ref*)>
<!-- rna(s) produced -->
<!ELEMENT Txinit_rna (Txinit_rna_E*)>
<!ELEMENT Txinit_rna_E (#PCDATA)>
<!-- tissue/time of expression -->
<!ELEMENT Txinit_expression (#PCDATA)>
<!-- transcription apparatus used at this site -->
<!ELEMENT Txinit_txsystem %ENUM;>
<!--
pol1 - eukaryotic Pol I
pol2 - eukaryotic Pol II
pol3 - eukaryotic Pol III
rna - RNA replicase
-->
<!ATTLIST Txinit_txsystem value (
unknown |
pol1 |
pol2 |
pol3 |
bacterial |
viral |
rna |
organelle |
other
) #REQUIRED >
<!-- modifiers on txsystem -->
<!ELEMENT Txinit_txdescr (#PCDATA)>
<!-- organism supplying transcription apparatus -->
<!ELEMENT Txinit_txorg (Org-ref)>
<!-- mapping precise or approx -->
<!ELEMENT Txinit_mapping-precise EMPTY>
<!ATTLIST Txinit_mapping-precise value ( true | false ) "false" >
<!-- does Seq-loc reflect mapping -->
<!ELEMENT Txinit_location-accurate EMPTY>
<!ATTLIST Txinit_location-accurate value ( true | false ) "false" >
<!ELEMENT Txinit_inittype %ENUM;>
<!ATTLIST Txinit_inittype value (
unknown |
single |
multiple |
region
) #REQUIRED >
<!ELEMENT Txinit_evidence (Tx-evidence*)>
<!ELEMENT Tx-evidence (
Tx-evidence_exp-code,
Tx-evidence_expression-system?,
Tx-evidence_low-prec-data?,
Tx-evidence_from-homolog?)>
<!ELEMENT Tx-evidence_exp-code %ENUM;>
<!--
rna-seq - direct RNA sequencing
rna-size - RNA length measurement
np-map - nuclease protection mapping with homologous sequence ladder
np-size - nuclease protected fragment length measurement
pe-seq - dideoxy RNA sequencing
cDNA-seq - full-length cDNA sequencing
pe-map - primer extension mapping with homologous sequence ladder
pe-size - primer extension product length measurement
pseudo-seq - full-length processed pseudogene sequencing
rev-pe-map - see NOTE (1) below
-->
<!ATTLIST Tx-evidence_exp-code value (
unknown |
rna-seq |
rna-size |
np-map |
np-size |
pe-seq |
cDNA-seq |
pe-map |
pe-size |
pseudo-seq |
rev-pe-map |
other
) #REQUIRED >
<!ELEMENT Tx-evidence_expression-system %ENUM;>
<!ATTLIST Tx-evidence_expression-system value (
unknown |
physiological |
in-vitro |
oocyte |
transfection |
transgenic |
other
) #REQUIRED >
<!ELEMENT Tx-evidence_low-prec-data EMPTY>
<!ATTLIST Tx-evidence_low-prec-data value ( true | false ) "false" >
<!-- experiment actually done on -->
<!ELEMENT Tx-evidence_from-homolog EMPTY>
<!ATTLIST Tx-evidence_from-homolog value ( true | false ) "false" >
<!--
close homolog
NOTE (1) length measurement of a reverse direction primer-extension
product (blocked by RNA 5'end) by comparison with
homologous sequence ladder (J. Mol. Biol. 199, 587)
-->
|
