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# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#
"""Perform two-point crossovers between the genomes of two organisms.
This module performs two-point crossover between two genomes.
There are two flavors: OnePointCrossover (Point) and TwoPointCrossover.
TwoPointCrossover is the minimal crossover technique that
facilitates diverse genome length. Do not use this if you need to
maintain consistent genome length.
TwoPointCrossover:
genome 1 -- A B*C D E F
genome 2 -- a b c*d e f
new genome 1 -- A B d e f
new genome 2 -- a b c C D E F
"""
# standard modules
from .GeneralPoint import TwoCrossover
class TwoPointCrossover(TwoCrossover):
"""Perform two point crossover between genomes at some defined rate.
This performs a crossover between two genomes at some defined frequency.
The location of the points of crossover are chosen randomly if the
crossover meets the probability to occur.
"""
def __init__(self, crossover_prob=.1):
"""Initialize to do crossovers at the specified probability.
"""
TwoCrossover.__init__(self, 2, crossover_prob)
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