1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801
|
#include <stdio.h> /* printf */
#include <stdlib.h> /* malloc */
#include <string.h> /* strcmp, strlen */
#include "trie.h"
static char* duplicate(const char* s) {
/* Don't use strdup, as it's not ANSI C. */
char* t = malloc((strlen(s)+1)*sizeof(char));
if (!t) return NULL;
strcpy(t, s);
return t;
}
/* Transition holds information about the transitions leading from
* one Trie to another. The trie structure here is different from
* typical ones, because the transitions between nodes can contain
* strings of arbitrary length, not just single characters. Suffix is
* the string that is matched from one node to the next.
*/
typedef struct {
char *suffix;
Trie* next;
} Transition;
/* Trie is a recursive data structure. A Trie contains zero or more
* Transitions that lead to more Tries. The transitions are stored
* in alphabetical order of the suffix member of the data structure.
* Trie also contains a pointer called value where the user can store
* arbitrary data. If value is NULL, then no data is stored here.
*/
struct Trie {
Transition *transitions;
unsigned char num_transitions;
void *value; /* specified by user, never freed or allocated by me! */
};
#define MAX_KEY_LENGTH (1024*1024)
static char KEY[MAX_KEY_LENGTH];
Trie* Trie_new(void) {
Trie* trie;
if(!(trie = malloc(sizeof(struct Trie))))
return NULL;
trie->transitions = NULL;
trie->num_transitions = 0;
trie->value = NULL;
return trie;
}
int Trie_set(Trie* trie, const char *key, const void *value) {
int i;
Transition* transition=NULL;
const char *suffix=NULL;
int retval = 0;
int first, last, mid;
if(!key[0]) {
trie->value = (void *)value;
return 0;
}
/* Insert the key in alphabetical order. Do a binary search to
find the proper place. */
first = 0;
last = trie->num_transitions-1;
i = -1;
while(first <= last) {
mid = (first+last)/2;
transition = &trie->transitions[mid];
suffix = transition->suffix;
if(key[0] < suffix[0])
last = mid-1;
else if(key[0] > suffix[0])
first = mid+1;
else {
i = mid;
break;
}
}
/* If no place was found for it, then the indexes will be in the
order last,first. Place it at index first. */
if(i == -1)
i = first;
/* If nothing matches, then insert a new trie here. */
if((i >= trie->num_transitions) || (key[0] != suffix[0])) {
char *new_suffix=NULL;
Trie* newtrie=NULL;
Transition* new_transitions=NULL;
/* Create some variables for the new transition. I'm going to
allocate these first so that if I can detect memory errors
before I mess up the data structure of the transitions.
*/
if(!(new_suffix = duplicate(key)))
goto insert_memerror;
if(!(newtrie = Trie_new()))
goto insert_memerror;
/* Create some space for the next transition. Allocate some
memory and shift the old transitions over to make room for
this one.
*/
if(!(new_transitions = malloc(sizeof(Transition) *
(trie->num_transitions+1))))
goto insert_memerror;
memcpy(new_transitions, trie->transitions,
sizeof(Transition)*i);
memcpy(&new_transitions[i+1], &trie->transitions[i],
sizeof(Transition)*(trie->num_transitions-i));
free(trie->transitions);
trie->transitions = new_transitions;
new_transitions = NULL;
trie->num_transitions += 1;
/* Initialize the new transition. */
transition = &trie->transitions[i];
transition->suffix = new_suffix;
transition->next = newtrie;
transition->next->value = (void *)value;
if(0) {
insert_memerror:
if(new_transitions) free(new_transitions);
if(newtrie) free(newtrie);
if(new_suffix) free(new_suffix);
return 1;
}
}
/* There are three cases where the key and suffix share some
letters.
1. suffix is proper substring of key.
2. key is proper substring of suffix.
3. neither is proper substring of other.
For cases 2 and 3, I need to first split up the transition
based on the number of characters shared. Then, I can insert
the rest of the key into the next trie.
*/
else {
/* Count the number of characters shared between key
and suffix. */
int chars_shared = 0;
while(key[chars_shared] && key[chars_shared] == suffix[chars_shared])
chars_shared++;
/* Case 2 or 3, split this sucker! */
if(chars_shared < strlen(suffix)) {
Trie* newtrie=NULL;
char *new_suffix1=NULL, *new_suffix2=NULL;
if(!(new_suffix1 = malloc(chars_shared+1)))
goto split_memerror;
strncpy(new_suffix1, key, chars_shared);
new_suffix1[chars_shared] = 0;
if(!(new_suffix2 = duplicate(suffix+chars_shared)))
goto split_memerror;
if(!(newtrie = Trie_new()))
goto split_memerror;
if(!(newtrie->transitions = malloc(sizeof(Transition))))
goto split_memerror;
newtrie->num_transitions = 1;
newtrie->transitions[0].next = transition->next;
newtrie->transitions[0].suffix = new_suffix2;
free(transition->suffix);
transition->suffix = new_suffix1;
transition->next = newtrie;
if(0) {
split_memerror:
if(newtrie && newtrie->transitions) free(newtrie->transitions);
if(newtrie) free(newtrie);
if(new_suffix2) free(new_suffix2);
if(new_suffix1) free(new_suffix1);
return 1;
}
}
retval = Trie_set(transition->next, key+chars_shared, value);
}
return retval;
}
void Trie_del(Trie* trie) {
int i;
if(!trie)
return;
for(i=0; i<trie->num_transitions; i++) {
Transition* transition = &trie->transitions[i];
if(transition->suffix)
free(transition->suffix);
Trie_del(transition->next);
}
free(trie);
}
void *Trie_get(const Trie* trie, const char *key) {
int first, last, mid;
if(!key[0]) {
return trie->value;
}
/* The transitions are stored in alphabetical order. Do a binary
* search to find the proper one.
*/
first = 0;
last = trie->num_transitions-1;
while(first <= last) {
Transition* transition;
char *suffix;
int c;
mid = (first+last)/2;
transition = &trie->transitions[mid];
suffix = transition->suffix;
/* If suffix is a substring of key, then get the value from
the next trie.
*/
c = strncmp(key, suffix, strlen(suffix));
if(c < 0)
last = mid-1;
else if(c > 0)
first = mid+1;
else
return Trie_get(transition->next, key+strlen(suffix));
}
return NULL;
}
/* DEBUG
static void
_print_trie_helper(const Trie* trie, int num_indent) {
int i, j;
char *message = "no value";
Transition *t;
if(trie->value != NULL)
message = "has value";
for(j=0; j<num_indent; j++)
printf(" ");
printf("%d transitions, %s.\n", trie->num_transitions, message);
for(i=0; i<trie->num_transitions; i++) {
t = &trie->transitions[i];
for(j=0; j<num_indent; j++)
printf(" ");
printf("suffix %s\n", t->suffix);
_print_trie_helper(t->next, num_indent+2);
}
}
static void
_print_trie(const Trie* trie) {
_print_trie_helper(trie, 0);
}
*/
/* Mutually recursive, so need to make a forward declaration. */
static void
_get_approximate_trie(const Trie* trie, const char *key, const int k,
void (*callback)(const char *key,
const void *value,
const int mismatches,
void *data),
void *data,
const int mismatches,
char *current_key, const int max_key
);
static void
_get_approximate_transition(const char *key,
const int k,
const Transition* transition,
const char *suffix,
void (*callback)(const char *key,
const void *value,
const int mismatches,
void *data),
void *data,
const int mismatches,
char *current_key, const int max_key
)
{
int i;
int prev_keylen = strlen(current_key);
/* Short circuit optimization. If there's too many characters to
possibly be a match, then don't even try to match things. */
if((int)(strlen(suffix) - strlen(key)) > k)
return;
/* Match as many characters as possible. */
i = 0;
while(suffix[i] && (key[i] == suffix[i])) {
i++;
}
/* Check to make sure the key is not too long. BUG: If it is,
fails silently. */
if((prev_keylen+i) >= max_key)
return;
strncat(current_key, suffix, i);
/* If all the letters in the suffix matched, then move to the
next trie. */
if(!suffix[i]) {
_get_approximate_trie(transition->next, &key[i], k, callback, data,
mismatches, current_key, max_key);
}
/* Otherwise, try out different kinds of mismatches. */
else if(k) {
int new_keylen = prev_keylen+i;
/* Letter replacement, skip the next letter in both the key and
suffix. */
if((new_keylen+1 < max_key) && key[i] && suffix[i]) {
current_key[new_keylen] = suffix[i];
current_key[new_keylen+1] = 0;
_get_approximate_transition(&key[i+1], k-1,
transition, &suffix[i+1],
callback, data,
mismatches+1, current_key, max_key);
current_key[new_keylen] = 0;
}
/* Insertion in key, skip the next letter in the key. */
if(key[i]) {
_get_approximate_transition(&key[i+1], k-1,
transition, &suffix[i],
callback, data,
mismatches+1, current_key, max_key);
}
/* Deletion from key, skip the next letter in the suffix. */
if((new_keylen+1 < max_key) && suffix[i]) {
current_key[new_keylen] = suffix[i];
current_key[new_keylen+1] = 0;
_get_approximate_transition(&key[i], k-1,
transition, &suffix[i+1],
callback, data,
mismatches+1, current_key, max_key);
current_key[new_keylen] = 0;
}
}
current_key[prev_keylen] = 0;
}
static void
_get_approximate_trie(const Trie* trie, const char *key, const int k,
void (*callback)(const char *key,
const void *value,
const int mismatches,
void *data),
void *data,
const int mismatches,
char *current_key, const int max_key
)
{
int i;
/* If there's no more key to match, then I'm done. */
if(!key[0]) {
if(trie->value)
(*callback)(current_key, trie->value, mismatches, data);
}
/* If there are no more mismatches allowed, then fall back to the
faster Trie_get. */
else if(!k) {
void *value = Trie_get(trie, key);
if(value) {
int l = strlen(current_key);
/* Make sure I have enough space for the full key. */
if(l + strlen(key) < max_key) {
strcat(current_key, key);
(*callback)(current_key, value, mismatches, data);
current_key[l] = 0;
}
/* BUG: Ran out of space for the key. This fails
silently, but should signal an error. */
}
}
/* If there are no more transitions, then all the characters left
in the key are mismatches. */
else if(!trie->num_transitions) {
if(trie->value && (strlen(key) <= k)) {
(*callback)(current_key, trie->value,
mismatches+strlen(key), data);
}
}
/* Otherwise, try to match each of the transitions. */
else {
for(i=0; i<trie->num_transitions; i++) {
Transition* transition = &trie->transitions[i];
const char *suffix = transition->suffix;
_get_approximate_transition(key, k, transition, suffix,
callback, data,
mismatches, current_key, max_key);
}
}
}
void
Trie_get_approximate(const Trie* trie, const char *key, const int k,
void (*callback)(const char *key,
const void *value,
const int mismatches,
void *data),
void *data
)
{
KEY[0] = 0;
_get_approximate_trie(trie, key, k, callback, data, 0, KEY,MAX_KEY_LENGTH);
}
int Trie_len(const Trie* trie)
{
int i;
int length = 0;
if(!trie)
return 0;
if(trie->value)
length += 1;
for(i=0; i<trie->num_transitions; i++) {
length += Trie_len(trie->transitions[i].next);
}
return length;
}
int Trie_has_key(const Trie* trie, const char *key)
{
return Trie_get(trie, key) != NULL;
}
int Trie_has_prefix(const Trie* trie, const char *prefix)
{
int first, last, mid;
if(!prefix[0]) {
return 1;
}
/* The transitions are stored in alphabetical order. Do a binary
* search to find the proper one.
*/
first = 0;
last = trie->num_transitions-1;
while(first <= last) {
Transition* transition;
char *suffix;
int suffixlen, prefixlen, minlen;
int c;
mid = (first+last)/2;
transition = &trie->transitions[mid];
suffix = transition->suffix;
suffixlen = strlen(suffix);
prefixlen = strlen(prefix);
minlen = (suffixlen < prefixlen) ? suffixlen : prefixlen;
c = strncmp(prefix, suffix, minlen);
if(c < 0)
last = mid-1;
else if(c > 0)
first = mid+1;
else
return Trie_has_prefix(transition->next, prefix+minlen);
}
return 0;
}
static void
_iterate_helper(const Trie* trie,
void (*callback)(const char *key,
const void *value,
void *data),
void *data,
char *current_key, const int max_key)
{
int i;
if(trie->value)
(*callback)(current_key, trie->value, data);
for(i=0; i<trie->num_transitions; i++) {
Transition* transition = &trie->transitions[i];
const char *suffix = transition->suffix;
int keylen = strlen(current_key);
if(keylen + strlen(suffix) >= max_key) {
/* BUG: This will fail silently. It should raise some
sort of error. */
continue;
}
strcat(current_key, suffix);
_iterate_helper(transition->next, callback, data,
current_key, max_key);
current_key[keylen] = 0;
}
}
void
Trie_iterate(const Trie* trie,
void (*callback)(const char *key,
const void *value,
void *data),
void *data)
{
KEY[0] = 0;
_iterate_helper(trie, callback, data, KEY, MAX_KEY_LENGTH);
}
static void
_with_prefix_helper(const Trie* trie, const char *prefix,
void (*callback)(const char *key,
const void *value,
void *data),
void *data,
char *current_key, const int max_key)
{
int first, last, mid;
if(!prefix[0]) {
_iterate_helper(trie, callback, data, current_key, max_key);
return;
}
/* The transitions are stored in alphabetical order. Do a binary
* search to find the proper one.
*/
first = 0;
last = trie->num_transitions-1;
while(first <= last) {
Transition* transition;
const char *suffix;
int suffixlen, prefixlen, minlen;
int c;
mid = (first+last)/2;
transition = &trie->transitions[mid];
suffix = transition->suffix;
suffixlen = strlen(suffix);
prefixlen = strlen(prefix);
minlen = (suffixlen < prefixlen) ? suffixlen : prefixlen;
c = strncmp(prefix, suffix, minlen);
if(c < 0)
last = mid-1;
else if(c > 0)
first = mid+1;
else {
/* Three cases here.
* 1. Suffix and prefix are the same.
* Add suffix to current_key, advance prefix to the
* end. Continue recursively. Since there is no more
* prefix, every sub-trie will be considered as having
* this prefix.
* 2. Suffix shorter than prefix.
* suffix A
* prefix AN
* Add suffix (A) to current_key. Advance prefix by
* 1. Continue recursively to match rest of prefix.
* 3. Suffix longer than prefix.
* suffix AN
* prefix A
* Add suffix (AN) to current_key. Advance prefix to
* the end. Continue recursively. Since there is no
* more prefix, every sub-trie will be considered as
* having this prefix.
*/
int keylen = strlen(current_key);
if(keylen + suffixlen >= max_key) {
/* BUG: This will fail silently. It should raise some
sort of error. */
break;
}
strncat(current_key, suffix, suffixlen);
_with_prefix_helper(transition->next, prefix+minlen,
callback, data, current_key, max_key);
current_key[keylen] = 0; /* reset current_key */
break;
}
}
}
void
Trie_with_prefix(const Trie* trie, const char *prefix,
void (*callback)(const char *key,
const void *value,
void *data),
void *data
)
{
/*_print_trie(trie);*/
KEY[0] = 0;
_with_prefix_helper(trie, prefix, callback, data, KEY, MAX_KEY_LENGTH);
}
/* Need to declare _serialize_transition here so it can be called from
_serialize_trie. */
static int _serialize_transition(const Transition* transition,
int (*write)(const void *towrite, const int length,
void *data),
int (*write_value)(const void *value, void *data),
void *data);
/* This library also provides code for flattening tries so that they
* can be saved and read back in later. The format of a serialized
* trie is:
* TYPE NBYTES DESCRIPTION
* byte 1 Whether or not there is a value
* variable variable If there is a value, let the client store it.
* byte 1 Number of transitions for this Trie.
* transition variable
* int 4 Number of characters in the suffix.
* suffix variable the suffix for this transition
* byte 1 Whether or not there is a trie
* trie variable Recursively points to another trie.
*
* The number of bytes and the endian may vary from platform to
* platform.
*/
static
int _serialize_trie(const Trie* trie,
int (*write)(const void *towrite, const int length,
void *data),
int (*write_value)(const void *value, void *data),
void *data)
{
int i;
unsigned char has_value;
has_value = (trie->value != NULL);
if(!(*write)(&has_value, sizeof(has_value), data))
return 0;
if(has_value) {
if(!(*write_value)(trie->value, data))
return 0;
}
if(!(*write)(&trie->num_transitions, sizeof(trie->num_transitions), data))
return 0;
for(i=0; i<trie->num_transitions; i++) {
if(!_serialize_transition(&trie->transitions[i],
write, write_value, data))
return 0;
}
return 1;
}
static
int _serialize_transition(const Transition* transition,
int (*write)(const void *towrite, const int length,
void *data),
int (*write_value)(const void *value, void *data),
void *data)
{
int suffixlen;
unsigned char has_trie;
suffixlen = strlen(transition->suffix);
if(!(*write)(&suffixlen, sizeof(suffixlen), data))
return 0;
if(!(*write)(transition->suffix, suffixlen, data))
return 0;
has_trie = (transition->next != NULL);
if(!(*write)(&has_trie, sizeof(has_trie), data))
return 0;
if(has_trie) {
if(!_serialize_trie(transition->next, write, write_value, data))
return 0;
}
return 1;
}
int Trie_serialize(const Trie* trie,
int (*write)(const void *towrite, const int length,
void *data),
int (*write_value)(const void *value, void *data),
void *data)
{
int success = _serialize_trie(trie, write, write_value, data);
(*write)(NULL, 0, data);
return success;
}
static
int _deserialize_transition(Transition* transition,
int (*read)(void *wasread, const int length,
void *data),
void *(*read_value)(void *data),
void *data);
static
int _deserialize_trie(Trie* trie,
int (*read)(void *wasread, const int length, void *data),
void *(*read_value)(void *data),
void *data)
{
int i;
unsigned char has_value;
if(!(*read)(&has_value, sizeof(has_value), data))
goto _deserialize_trie_error;
if(has_value != 0 && has_value != 1)
goto _deserialize_trie_error;
if(has_value) {
if(!(trie->value = (*read_value)(data)))
goto _deserialize_trie_error;
}
if(!(*read)(&trie->num_transitions, sizeof(trie->num_transitions), data))
goto _deserialize_trie_error;
if(!(trie->transitions =
malloc(trie->num_transitions*sizeof(Transition))))
goto _deserialize_trie_error;
for(i=0; i<trie->num_transitions; i++) {
trie->transitions[i].suffix = NULL;
trie->transitions[i].next = NULL;
}
for(i=0; i<trie->num_transitions; i++) {
if(!_deserialize_transition(&trie->transitions[i],
read, read_value, data))
goto _deserialize_trie_error;
}
return 1;
_deserialize_trie_error:
trie->num_transitions = 0;
if(trie->transitions) {
free(trie->transitions);
trie->transitions = NULL;
}
trie->value = NULL;
return 0;
}
static
int _deserialize_transition(Transition* transition,
int (*read)(void *wasread, const int length,
void *data),
void *(*read_value)(void *data),
void *data)
{
int suffixlen;
unsigned char has_trie;
if(!(*read)(&suffixlen, sizeof(suffixlen), data))
goto _deserialize_transition_error;
if(suffixlen < 0 || suffixlen >= MAX_KEY_LENGTH) {
printf("MAX_KEY_LENGTH too short [%d:%d]\n",
MAX_KEY_LENGTH, suffixlen);
goto _deserialize_transition_error;
}
if(!(*read)(KEY, suffixlen, data))
goto _deserialize_transition_error;
KEY[suffixlen] = 0;
if(!(transition->suffix = duplicate(KEY)))
goto _deserialize_transition_error;
if(!(*read)(&has_trie, sizeof(has_trie), data))
goto _deserialize_transition_error;
if(has_trie != 0 && has_trie != 1)
goto _deserialize_transition_error;
if(has_trie) {
transition->next = Trie_new();
if(!_deserialize_trie(transition->next, read, read_value, data))
goto _deserialize_transition_error;
}
return 1;
_deserialize_transition_error:
if(transition->suffix) {
free(transition->suffix);
transition->suffix = NULL;
}
if(transition->next) {
Trie_del(transition->next);
transition->next = NULL;
}
return 0;
}
Trie* Trie_deserialize(int (*read)(void *wasread, const int length, void *data),
void *(*read_value)(void *data),
void *data)
{
Trie* trie = Trie_new();
if(!_deserialize_trie(trie, read, read_value, data)) {
Trie_del(trie);
return NULL;
}
return trie;
}
|