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Folder: Tests
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d | rwxr-xr-x | 148 | Abi |
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d | rwxr-xr-x | 82 | Ace |
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d | rwxr-xr-x | 40 | Affy |
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d | rwxr-xr-x | 120 | BWA |
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d | rwxr-xr-x | 115 | BioSQL |
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d | rwxr-xr-x | 8,192 | Blast |
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d | rwxr-xr-x | 4,096 | Blat |
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d | rwxr-xr-x | 30 | CDAO |
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d | rwxr-xr-x | 148 | Clustalw |
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d | rwxr-xr-x | 45 | CodonUsage |
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d | rwxr-xr-x | 48 | Compass |
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d | rwxr-xr-x | 4,096 | EMBL |
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d | rwxr-xr-x | 4,096 | Emboss |
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d | rwxr-xr-x | 4,096 | Entrez |
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d | rwxr-xr-x | 101 | Enzymes |
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d | rwxr-xr-x | 4,096 | Exonerate |
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d | rwxr-xr-x | 34 | ExtendedPhylip |
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d | rwxr-xr-x | 30 | FSSP |
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d | rwxr-xr-x | 4,096 | Fasta |
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d | rwxr-xr-x | 129 | GFF |
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d | rwxr-xr-x | 4,096 | GenBank |
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d | rwxr-xr-x | 4,096 | Geo |
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d | rwxr-xr-x | 48 | Graphics |
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d | rwxr-xr-x | 4,096 | Hmmer |
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d | rwxr-xr-x | 93 | IntelliGenetics |
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d | rwxr-xr-x | 4,096 | KEGG |
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d | rwxr-xr-x | 4,096 | MEME |
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d | rwxr-xr-x | 97 | Medline |
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d | rwxr-xr-x | 4,096 | MetaTool |
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d | rwxr-xr-x | 4,096 | Motif |
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d | rwxr-xr-x | 120 | NBRF |
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d | rwxr-xr-x | 4,096 | NeXML |
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d | rwxr-xr-x | 78 | NeuralNetwork |
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d | rwxr-xr-x | 4,096 | Nexus |
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d | rwxr-xr-x | 114 | PAML |
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d | rwxr-xr-x | 4,096 | PDB |
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d | rwxr-xr-x | 79 | Phd |
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d | rwxr-xr-x | 4,096 | Phylip |
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d | rwxr-xr-x | 4,096 | PhyloXML |
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d | rwxr-xr-x | 4,096 | PopGen |
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d | rwxr-xr-x | 156 | Prosite |
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d | rwxr-xr-x | 4,096 | Quality |
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d | rwxr-xr-x | 4,096 | Rebase |
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d | rwxr-xr-x | 69 | Registry |
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d | rwxr-xr-x | 4,096 | Roche |
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d | rwxr-xr-x | 4,096 | SCOP |
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d | rwxr-xr-x | 29 | Saf |
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d | rwxr-xr-x | 4,096 | SamBam |
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d | rwxr-xr-x | 4,096 | SeqXML |
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d | rwxr-xr-x | 51 | Stockholm |
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d | rwxr-xr-x | 4,096 | SubsMat |
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d | rwxr-xr-x | 4,096 | SwissProt |
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d | rwxr-xr-x | 4,096 | TreeConstruction |
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d | rwxr-xr-x | 83 | UniGene |
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d | rwxr-xr-x | 84 | Wise |
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d | rwxr-xr-x | 4,096 | codonalign |
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d | rwxr-xr-x | 4,096 | motifs |
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d | rwxr-xr-x | 4,096 | output |
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d | rwxr-xr-x | 4,096 | phenotype |
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- | rw-r--r-- | 11 | .cvsignore |
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- | rw-r--r-- | 635 | biosql.ini.sample |
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- | rw-r--r-- | 44,988 | common_BioSQL.py |
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- | rw-r--r-- | 3,682 | common_BioSQL_online.py |
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- | rw-r--r-- | 1,216 | requires_internet.py |
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- | rw-r--r-- | 880 | requires_wise.py |
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- | rw-r--r-- | 18,930 | run_tests.py |
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- | rw-r--r-- | 7,417 | search_tests_common.py |
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- | rw-r--r-- | 12,995 | seq_tests_common.py |
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- | rw-r--r-- | 118,587 | test_Ace.py |
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- | rw-r--r-- | 14,819 | test_AlignIO.py |
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- | rw-r--r-- | 12,096 | test_AlignIO_ClustalIO.py |
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- | rw-r--r-- | 15,300 | test_AlignIO_EmbossIO.py |
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- | rw-r--r-- | 2,794 | test_AlignIO_FastaIO.py |
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- | rw-r--r-- | 8,602 | test_AlignIO_PhylipIO.py |
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- | rw-r--r-- | 2,892 | test_AlignIO_convert.py |
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- | rw-r--r-- | 5,565 | test_AlignInfo.py |
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- | rw-r--r-- | 4,176 | test_Application.py |
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- | rw-r--r-- | 6,982 | test_BWA_tool.py |
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- | rw-r--r-- | 823 | test_BioSQL_MySQLdb.py |
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- | rw-r--r-- | 774 | test_BioSQL_MySQLdb_online.py |
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- | rw-r--r-- | 831 | test_BioSQL_mysql_connector.py |
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- | rw-r--r-- | 782 | test_BioSQL_mysql_connector_online.py |
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- | rw-r--r-- | 824 | test_BioSQL_psycopg2.py |
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- | rw-r--r-- | 775 | test_BioSQL_psycopg2_online.py |
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- | rw-r--r-- | 2,462 | test_BioSQL_sqlite3.py |
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- | rw-r--r-- | 827 | test_BioSQL_sqlite3_online.py |
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- | rw-r--r-- | 3,912 | test_CAPS.py |
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- | rw-r--r-- | 4,448 | test_CelFile.py |
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- | rw-r--r-- | 1,217 | test_Chi2.py |
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- | rwxr-xr-x | 8,727 | test_ClustalOmega_tool.py |
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- | rw-r--r-- | 12,171 | test_Clustalw_tool.py |
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- | rw-r--r-- | 39,681 | test_Cluster.py |
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- | rw-r--r-- | 6,804 | test_CodonTable.py |
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- | rw-r--r-- | 1,201 | test_CodonUsage.py |
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- | rw-r--r-- | 4,164 | test_ColorSpiral.py |
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- | rw-r--r-- | 4,032 | test_Compass.py |
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- | rw-r--r-- | 6,923 | test_Consensus.py |
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- | rw-r--r-- | 16,648 | test_Crystal.py |
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- | rw-r--r-- | 1,392 | test_DSSP_tool.py |
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- | rw-r--r-- | 4,630 | test_Dialign_tool.py |
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- | rw-r--r-- | 258 | test_DocSQL.py |
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- | rw-r--r-- | 1,663 | test_EMBL_unittest.py |
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- | rw-r--r-- | 41,892 | test_Emboss.py |
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- | rw-r--r-- | 12,726 | test_EmbossPhylipNew.py |
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- | rw-r--r-- | 10,438 | test_EmbossPrimer.py |
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- | rw-r--r-- | 6,681 | test_Entrez.py |
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- | rw-r--r-- | 9,199 | test_Entrez_online.py |
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- | rw-r--r-- | 344,425 | test_Entrez_parser.py |
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- | rw-r--r-- | 4,592 | test_Enzyme.py |
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- | rw-r--r-- | 2,016 | test_FSSP.py |
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- | rw-r--r-- | 6,599 | test_Fasttree_tool.py |
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- | rw-r--r-- | 3,540 | test_File.py |
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- | rw-r--r-- | 18,113 | test_GACrossover.py |
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- | rw-r--r-- | 6,734 | test_GAMutation.py |
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- | rw-r--r-- | 5,677 | test_GAOrganism.py |
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- | rw-r--r-- | 14,689 | test_GAQueens.py |
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- | rw-r--r-- | 2,135 | test_GARepair.py |
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- | rw-r--r-- | 6,075 | test_GASelection.py |
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- | rw-r--r-- | 9,464 | test_GenBank.py |
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- | rw-r--r-- | 12,162 | test_GenBank_unittest.py |
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- | rwxr-xr-x | 45,392 | test_GenomeDiagram.py |
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- | rw-r--r-- | 4,021 | test_GraphicsBitmaps.py |
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- | rw-r--r-- | 38,968 | test_GraphicsChromosome.py |
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- | rw-r--r-- | 2,691 | test_GraphicsDistribution.py |
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- | rw-r--r-- | 3,053 | test_GraphicsGeneral.py |
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- | rw-r--r-- | 6,551 | test_HMMCasino.py |
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- | rw-r--r-- | 16,879 | test_HMMGeneral.py |
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- | rw-r--r-- | 1,124 | test_KDTree.py |
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- | rw-r--r-- | 2,734 | test_KEGG.py |
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- | rw-r--r-- | 9,607 | test_KEGG_online.py |
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- | rw-r--r-- | 8,009 | test_KGML_graphics.py |
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- | rw-r--r-- | 2,836 | test_KGML_graphics_online.py |
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- | rw-r--r-- | 4,819 | test_KGML_nographics.py |
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- | rw-r--r-- | 5,143 | test_KeyWList.py |
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- | rw-r--r-- | 1,943 | test_Location.py |
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- | rw-r--r-- | 4,343 | test_LogisticRegression.py |
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- | rw-r--r-- | 8,713 | test_MMCIF.py |
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- | rwxr-xr-x | 5,934 | test_MSAProbs_tool.py |
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- | rw-r--r-- | 7,839 | test_Mafft_tool.py |
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- | rw-r--r-- | 11,532 | test_MarkovModel.py |
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- | rw-r--r-- | 17,153 | test_Medline.py |
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- | rw-r--r-- | 16,959 | test_Muscle_tool.py |
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- | rw-r--r-- | 1,259 | test_NACCESS_tool.py |
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- | rw-r--r-- | 1,352,208 | test_NCBITextParser.py |
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- | rw-r--r-- | 97,852 | test_NCBIXML.py |
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- | rw-r--r-- | 16,653 | test_NCBI_BLAST_tools.py |
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- | rw-r--r-- | 7,714 | test_NCBI_qblast.py |
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- | rw-r--r-- | 1,815 | test_NNExclusiveOr.py |
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- | rw-r--r-- | 24,000 | test_NNGene.py |
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- | rw-r--r-- | 3,694 | test_NNGeneral.py |
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- | rw-r--r-- | 3,667 | test_NaiveBayes.py |
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- | rwxr-xr-x | 22,263 | test_Nexus.py |
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- | rw-r--r-- | 13,247 | test_PAML_baseml.py |
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- | rw-r--r-- | 26,147 | test_PAML_codeml.py |
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- | rw-r--r-- | 4,925 | test_PAML_tools.py |
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- | rw-r--r-- | 5,608 | test_PAML_yn00.py |
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- | rw-r--r-- | 58,799 | test_PDB.py |
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- | rw-r--r-- | 2,087 | test_PDB_KDTree.py |
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- | rw-r--r-- | 4,711 | test_ParserSupport.py |
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- | rw-r--r-- | 7,532 | test_Pathway.py |
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- | rwxr-xr-x | 19,907 | test_Phd.py |
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- | rw-r--r-- | 21,831 | test_Phylo.py |
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- | rw-r--r-- | 30,228 | test_PhyloXML.py |
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- | rw-r--r-- | 3,280 | test_Phylo_CDAO.py |
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- | rw-r--r-- | 3,899 | test_Phylo_NeXML.py |
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- | rw-r--r-- | 3,508 | test_Phylo_matplotlib.py |
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- | rw-r--r-- | 1,172 | test_Phylo_networkx.py |
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- | rw-r--r-- | 4,755 | test_PopGen_DFDist.py |
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- | rw-r--r-- | 4,479 | test_PopGen_FDist.py |
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- | rw-r--r-- | 3,539 | test_PopGen_FDist_nodepend.py |
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- | rw-r--r-- | 2,139 | test_PopGen_FastSimCoal.py |
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- | rw-r--r-- | 3,369 | test_PopGen_GenePop.py |
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- | rw-r--r-- | 4,002 | test_PopGen_GenePop_EasyController.py |
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- | rw-r--r-- | 5,297 | test_PopGen_GenePop_nodepend.py |
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- | rw-r--r-- | 2,242 | test_PopGen_SimCoal.py |
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- | rw-r--r-- | 2,182 | test_PopGen_SimCoal_nodepend.py |
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- | rw-r--r-- | 8,461 | test_Prank_tool.py |
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- | rw-r--r-- | 3,806 | test_Probcons_tool.py |
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- | rw-r--r-- | 9,765 | test_ProtParam.py |
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- | rw-r--r-- | 1,996 | test_QCPSuperimposer.py |
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- | rw-r--r-- | 2,515 | test_RCSBFormats.py |
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- | rw-r--r-- | 8,738 | test_Restriction.py |
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- | rw-r--r-- | 2,236 | test_SCOP_Astral.py |
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- | rw-r--r-- | 3,686 | test_SCOP_Cla.py |
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- | rw-r--r-- | 1,969 | test_SCOP_Des.py |
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- | rw-r--r-- | 1,857 | test_SCOP_Dom.py |
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- | rw-r--r-- | 1,414 | test_SCOP_Hie.py |
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- | rw-r--r-- | 4,220 | test_SCOP_Raf.py |
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- | rwxr-xr-x | 2,348 | test_SCOP_Residues.py |
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- | rw-r--r-- | 5,700 | test_SCOP_Scop.py |
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- | rw-r--r-- | 635 | test_SCOP_online.py |
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- | rw-r--r-- | 2,028 | test_SVDSuperimposer.py |
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- | rw-r--r-- | 39,697 | test_SearchIO_blast_tab.py |
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- | rw-r--r-- | 9,686 | test_SearchIO_blast_tab_index.py |
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- | rw-r--r-- | 105,967 | test_SearchIO_blast_text.py |
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- | rw-r--r-- | 162,794 | test_SearchIO_blast_xml.py |
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- | rw-r--r-- | 38,081 | test_SearchIO_blast_xml_index.py |
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- | rw-r--r-- | 55,644 | test_SearchIO_blat_psl.py |
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- | rw-r--r-- | 2,600 | test_SearchIO_blat_psl_index.py |
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- | rw-r--r-- | 92,795 | test_SearchIO_exonerate.py |
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- | rw-r--r-- | 954 | test_SearchIO_exonerate_text_index.py |
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- | rw-r--r-- | 967 | test_SearchIO_exonerate_vulgar_index.py |
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- | rw-r--r-- | 134,142 | test_SearchIO_fasta_m10.py |
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- | rw-r--r-- | 2,166 | test_SearchIO_fasta_m10_index.py |
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- | rw-r--r-- | 22,275 | test_SearchIO_hmmer2_text.py |
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- | rw-r--r-- | 23,891 | test_SearchIO_hmmer2_text_index.py |
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- | rw-r--r-- | 27,816 | test_SearchIO_hmmer3_domtab.py |
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- | rw-r--r-- | 5,452 | test_SearchIO_hmmer3_domtab_index.py |
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- | rw-r--r-- | 20,424 | test_SearchIO_hmmer3_tab.py |
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- | rw-r--r-- | 4,497 | test_SearchIO_hmmer3_tab_index.py |
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- | rw-r--r-- | 114,547 | test_SearchIO_hmmer3_text.py |
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- | rw-r--r-- | 18,843 | test_SearchIO_hmmer3_text_index.py |
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- | rw-r--r-- | 66,674 | test_SearchIO_model.py |
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- | rw-r--r-- | 8,412 | test_SearchIO_write.py |
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- | rw-r--r-- | 1,253 | test_SeqFeature.py |
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- | rw-r--r-- | 29,083 | test_SeqIO.py |
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- | rw-r--r-- | 575,166 | test_SeqIO_AbiIO.py |
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- | rw-r--r-- | 6,437 | test_SeqIO_FastaIO.py |
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- | rw-r--r-- | 3,936 | test_SeqIO_Insdc.py |
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- | rw-r--r-- | 4,749 | test_SeqIO_PdbIO.py |
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- | rw-r--r-- | 36,293 | test_SeqIO_QualityIO.py |
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- | rw-r--r-- | 7,642 | test_SeqIO_SeqXML.py |
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- | rw-r--r-- | 10,970 | test_SeqIO_convert.py |
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- | rw-r--r-- | 58,737 | test_SeqIO_features.py |
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- | rw-r--r-- | 28,883 | test_SeqIO_index.py |
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- | rw-r--r-- | 3,252 | test_SeqIO_online.py |
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- | rw-r--r-- | 8,812 | test_SeqIO_write.py |
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- | rw-r--r-- | 17,812 | test_SeqRecord.py |
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- | rw-r--r-- | 7,041 | test_SeqUtils.py |
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- | rw-r--r-- | 27,278 | test_Seq_objs.py |
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- | rw-r--r-- | 15,213 | test_SffIO.py |
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- | rw-r--r-- | 3,379 | test_SubsMat.py |
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- | rw-r--r-- | 100,569 | test_SwissProt.py |
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- | rw-r--r-- | 4,554 | test_TCoffee_tool.py |
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- | rw-r--r-- | 23,361 | test_TogoWS.py |
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- | rw-r--r-- | 12,090 | test_TreeConstruction.py |
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- | rw-r--r-- | 8,612 | test_Tutorial.py |
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- | rw-r--r-- | 68,378 | test_UniGene.py |
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- | rw-r--r-- | 22,045 | test_Uniprot.py |
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- | rwxr-xr-x | 2,604 | test_Wise.py |
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- | rw-r--r-- | 6,350 | test_XXmotif_tool.py |
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- | rw-r--r-- | 6,725 | test_align.py |
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- | rw-r--r-- | 16,028 | test_bgzf.py |
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- | rw-r--r-- | 12,041 | test_codonalign.py |
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- | rw-r--r-- | 1,239 | test_geo.py |
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- | rw-r--r-- | 3,531 | test_kNN.py |
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- | rwxr-xr-x | 1,113 | test_lowess.py |
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- | rw-r--r-- | 4,689 | test_mmtf.py |
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- | rw-r--r-- | 105,419 | test_motifs.py |
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- | rw-r--r-- | 1,939 | test_motifs_online.py |
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- | rw-r--r-- | 20,255 | test_pairwise2.py |
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- | rw-r--r-- | 12,792 | test_phenotype.py |
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- | rw-r--r-- | 2,316 | test_phenotype_fit.py |
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- | rw-r--r-- | 2,265 | test_phyml_tool.py |
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- | rw-r--r-- | 56,212 | test_prodoc.py |
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- | rw-r--r-- | 196,962 | test_prosite1.py |
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- | rw-r--r-- | 54,420 | test_prosite2.py |
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- | rwxr-xr-x | 4,728 | test_psw.py |
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- | rw-r--r-- | 750 | test_py3k.py |
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- | rw-r--r-- | 2,366 | test_raxml_tool.py |
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- | rw-r--r-- | 10,943 | test_samtools_tool.py |
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- | rw-r--r-- | 51,623 | test_seq.py |
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- | rw-r--r-- | 3,564 | test_translate.py |
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- | rw-r--r-- | 6,296 | test_trie.py |