1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
|
BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|1718062|sp|P16153|UTXA_CLODI UTXA PROTEIN
(166 letters)
Database: data/swissprot
82,258 sequences; 29,652,561 total letters
Searching..................................................done
>gi|1718062|sp|P16153|UTXA_CLODI UTXA PROTEIN
Length = 166
Score = 332 bits (843), Expect = 2e-91
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MHSSSPFYISNGNKIFFYINLGGVMNMTISFLSEHIFIKLVILTISFDTLLGCLSAIKSR 60
MHSSSPFYISNGNKIFFYINLGGVMNMTISFLSEHIFIKLVILTISFDTLLGCLSAIKSR
Sbjct: 1 MHSSSPFYISNGNKIFFYINLGGVMNMTISFLSEHIFIKLVILTISFDTLLGCLSAIKSR 60
Query: 61 KFNSSFGIDGGIRKVAMIACIFFLSVVDILTKFNFLFMLPQDCINFLRLKHLGISEFFSI 120
KFNSSFGIDGGIRKVAMIACIFFLSVVDILTKFNFLFMLPQDCINFLRLKHLGISEFFSI
Sbjct: 61 KFNSSFGIDGGIRKVAMIACIFFLSVVDILTKFNFLFMLPQDCINFLRLKHLGISEFFSI 120
Query: 121 LFILYESVSILKNMCLCGLPVPKRLKEKIAILLDAMTDEMNAKDEK 166
LFILYESVSILKNMCLCGLPVPKRLKEKIAILLDAMTDEMNAKDEK
Sbjct: 121 LFILYESVSILKNMCLCGLPVPKRLKEKIAILLDAMTDEMNAKDEK 166
>gi|140528|sp|P24811|YQXH_BACSU HYPOTHETICAL 15.7 KD PROTEIN IN
SPOIIIC-CWLA INTERGENIC REGION (ORF2)
Length = 140
Score = 39.5 bits (90), Expect = 0.004
Identities = 27/130 (20%), Positives = 55/130 (41%), Gaps = 19/130 (14%)
Query: 37 FIKLVILTISFDTLLGCLSAIKSRKFNSSFGIDGGIRKVAMIACIFFLSVVDILTKFNFL 96
++ L+++ D L G + A K +K S G +RK+ + +V+D + N
Sbjct: 26 YLDLLLVLSIIDVLTGVIKAWKFKKLRSRSAWFGYVRKLLNFFAVILANVIDTVLNLN-- 83
Query: 97 FMLPQDCINFLRLKHLGISEFFSILF-ILYESVSILKNMCLCGLPVPKRLKEKIAILLDA 155
G+ F ++LF I E +SI +N+ G+ +P + +++ + +
Sbjct: 84 ----------------GVLTFGTVLFYIANEGLSITENLAQIGVKIPSSITDRLQTIENE 127
Query: 156 MTDEMNAKDE 165
N D+
Sbjct: 128 KEQSKNNADK 137
>gi|141088|sp|P26835|YNGD_CLOPE HYPOTHETICAL 14.9 KD PROTEIN IN NAGH
3'REGION (ORFD)
Length = 132
Score = 38.7 bits (88), Expect = 0.007
Identities = 24/110 (21%), Positives = 52/110 (46%), Gaps = 18/110 (16%)
Query: 41 VILTISFDTLLGCLSAIKSRKFNSSFGIDGGIRKVAMIACIFFLSVVD-ILTKFNFLFML 99
+++ I D L G + KS++ S+ G+ G +K ++ + ++D +L ++F
Sbjct: 33 LLVFIFLDYLTGVIKGCKSKELCSNIGLRGITKKGLILVVLLVAVMLDRLLDNGTWMFRT 92
Query: 100 PQDCINFLRLKHLGISEFFSILFILYESVSILKNMCLCGLPVPKRLKEKI 149
+ +I+ E +SIL+N G+P+P++LK+ +
Sbjct: 93 -----------------LIAYFYIMNEGISILENCAALGVPIPEKLKQAL 125
>gi|6014830|sp|O78935|CYB_MARAM CYTOCHROME B
Length = 379
Score = 29.3 bits (64), Expect = 4.6
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 80 CIFFLSVVDILTKFNFLFMLPQDCINFLRLKHLGISEFFSILFILYESVSILKNMCL 136
C+F+L V D+LT ++ P + F+ + L +F+IL IL ++SI++N L
Sbjct: 323 CLFWLLVADLLT-LTWIGGQPVEH-PFITIGQLASILYFAILLILMPAISIIENNLL 377
>gi|1351589|sp|P47694|Y456_MYCGE HYPOTHETICAL PROTEIN MG456
Length = 334
Score = 29.0 bits (63), Expect = 6.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 90 LTKFNFLFMLPQDCINFLRLKHLGISEFFSILFILYESVSILKN 133
LTKFN F+ P FLR+ +G+ FS++ I + S +N
Sbjct: 4 LTKFNKFFLTPNKLNAFLRV--IGLCGLFSVIAISFGIYSYTRN 45
>gi|2496246|sp|Q57881|Y439_METJA HYPOTHETICAL ATP-BINDING PROTEIN
MJ0439
Length = 361
Score = 28.6 bits (62), Expect = 7.8
Identities = 19/56 (33%), Positives = 30/56 (52%), Gaps = 12/56 (21%)
Query: 106 FLRLKHLGIS---EFFSILFILYES----VSILKNMC-----LCGLPVPKRLKEKI 149
++ L+ + IS +F +LF YE V I+K++ LCG+P PK E+I
Sbjct: 68 YINLRGIFISKYKDFIEVLFEEYEEDRKPVEIIKSLIKDVPSLCGIPTPKNTLEEI 123
Database: data/swissprot
Posted date: Nov 15, 1999 2:55 PM
Number of letters in database: 29,652,561
Number of sequences in database: 82,258
Lambda K H
0.331 0.146 0.428
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8801581
Number of Sequences: 82258
Number of extensions: 320828
Number of successful extensions: 892
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 6
length of query: 166
length of database: 29,652,561
effective HSP length: 46
effective length of query: 120
effective length of database: 25,868,693
effective search space: 3104243160
effective search space used: 3104243160
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 62 (28.6 bits)
|
