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BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|132349|sp|P15394|REPA_AGRTU REPLICATING PROTEIN
(250 letters)
Database: data/swissprot
82,258 sequences; 29,652,561 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|132349|sp|P15394|REPA_AGRTU REPLICATING PROTEIN 514 e-146
gi|123932|sp|P19922|HYIN_BRAJA INDOLEACETAMIDE HYDROLASE (IAH) ... 34 0.29
gi|137670|sp|P06422|VE2_HPV08 REGULATORY PROTEIN E2 32 0.86
gi|5921693|sp|Q05152|CCAB_RABIT VOLTAGE-DEPENDENT N-TYPE CALCIU... 32 1.5
gi|121952|sp|P02256|H1_PARAN HISTONE H1, GONADAL 31 2.5
gi|124141|sp|P08392|ICP4_HSV11 TRANS-ACTING TRANSCRIPTIONAL PRO... 31 3.3
gi|3915729|sp|P51592|HYDP_DROME HYPERPLASTIC DISCS PROTEIN (HYD... 31 3.3
gi|462182|sp|P33438|GLT_DROME GLUTACTIN PRECURSOR 31 3.3
gi|731294|sp|P39713|YAG1_YEAST HYPOTHETICAL ZINC-TYPE ALCOHOL D... 30 4.3
gi|1708851|sp|P55268|LMB2_HUMAN LAMININ BETA-2 CHAIN PRECURSOR ... 30 4.3
gi|2495137|sp|Q24704|H1_DROVI HISTONE H1 29 7.5
gi|1172635|sp|P46466|PRS4_ORYSA 26S PROTEASE REGULATORY SUBUNIT... 29 9.8
gi|6093970|sp|Q61085|RHOP_MOUSE GTP-RHO BINDING PROTEIN 1 (RHOP... 29 9.8
gi|547963|sp|Q01989|MYS9_DROME MYOSIN HEAVY CHAIN 95F (95F MHC) 29 9.8
gi|6226905|sp|Q59567|TOP1_MYCTU DNA TOPOISOMERASE I (OMEGA-PROT... 29 9.8
QUERY 1 MFQQIGAVQAKSGTDEPAHPCEKFPPERKCEAVFWKPLPRHEAREILLAARKYELAMKQP 60
0 1 MFQQIGAVQAKSGTDEPAHPCEKFPPERKCEAVFWKPLPRHEAREILLAARKYELAMKQP 60
6011 ------------------------------------------------------------
42735 ------------------------------------------------------------
14903 ------------------------------------------------------------
36499 ------------------------------------------------------------
36850 ------------------------------------------------------------
76818 ------------------------------------------------------------
14245 ------------------------------------------------------------
47667 228 -----------------------------------------------------ELAEKMG 234
57583 ------------------------------------------------------------
59981 ------------------------------------------------------------
23110 ------------------------------------------------------------
58685 ------------------------------------------------------------
14284 ------------------------------------------------------------
72095 ------------------------------------------------------------
QUERY 61 GKRTGPLGHVALEVLDYLTNLVDFGNGRLDPSISTIMEKIGRAESCMSALYPNRQRGRRP 120
0 61 GKRTGPLGHVALEVLDYLTNLVDFGNGRLDPSISTIMEKIGRAESCMSALYPNRQRGRRP 120
6011 ------------------------------------------------------------
42735 ------------------------------------------------------------
14903 822 ---------------------------------------------------PGRDAPRGP 830
36499 ------------------------------------------------------------
36850 59 -----------------------------------------------------RRDGRAP 65
76818 ------------------------------------------------------------
14245 644 -------------------------------------EYVRAQEARQQEFIREREQRRRE 666
47667 235 ARVYDPTAHAAKESIDYLRSIADGGDG--------------------------------- 261
57583 1671 --------------------------------------KLKRAGNSLAASTAEETAGSAQ 1692
59981 ------------------------------------------------------------
23110 19 ---------------------------------------------------------RKP 21
58685 ------------------------------------------------------------
14284 ------------------------------------------------------------
72095 842 -----------------------------------------------------KRRGRQS 848
QUERY 121 AGAADKQRLPLEPAGARPRALLGKYVRK------AA---PL---PDDAAQAR-------- 160
0 121 AGAADKQRLPLEPAGARPRALLGKYVRK------AA---PL---PDDAAQAR-------- 160
6011 ------------------------------------------------------------
42735 258 --------------------------------------------PQKEQRRS-------- 265
14903 831 PGGKSRPDGSEAPEGADPPRRHHRHRDK------DK---AP---ATVPSAGE-------- 870
36499 147 AAAKRKAALAKKKAAAAKRKAAAKAKKA------KK---PK---KKAAKKAK-------- 186
36850 66 AAGTDAGEDAGDAVSPRQLALLASMVEE------AVRTIPT---PDPAASPP-------- 108
76818 ------------------------------------------------------------
14245 667 QQLRDQQRYPQQ----EPREQQDERIRQ------QR---EQ---EERLRQQR-------- 702
47667 260 ------------------------------------------------------------ 261
57583 1693 GRAQEAEQLLRGPLGDQYQTVKALAERK------AQ---GVLAAQARAEQLR-------- 1735
59981 124 ---------------AKPKA--SAVEKK------TK---KV---NASAARAT-------- 146
23110 22 GGDGDKKDRKFEPSAAPSR--VGRKQRKQKGPEAAA---RL---PNVAPLSKCRLRLLKL 73
58685 ------------------------------------------------------------
14284 936 ---------------------------R------AA---KE---AEEQRQRE-------- 948
72095 849 ASAPPLRELGTDPASGKPMVI--KDGRF------GP---YV---TDGETNAS-------- 886
QUERY 161 Q----ERHDTIKAHMDS---LSPADRLR----ET--VEDRTRAEQLAG-YVE-RAAQNR- 204
0 161 Q----ERHDTIKAHMDS---LSPADRLR----ET--VEDRTRAEQLAG-YVE-RAAQNR- 204
6011 12 -----QRRDLRGRDRRS---ASRTDARR----QS--AAERGCRRSQRG-SAE-GCACGR- 54
42735 266 R----SRHRT-RSRSRS---LSRVRAVG----ST--TVSRSRSSSLTK-AVR-PRSRSR- 308
14903 871 Q----DRAEALRAEGGE---LGPREERG----RP----RRSRSKEAPG-APEVRSDRGRG 914
36499 187 K----PAKKSPKKAKKP---AKKSPKKK----KA--KRSPKKAKKAAG-KRK-PAAKKA- 230
36850 109 RTPAFRADDDDGDEYDD---AADAAGDR----AP--ARGREREAPLRGAYPD-PTDRLS- 157
76818 1967 -----DKQDSISGRINN---LSPMTESY----DT--DDELANLEEFNA-DVQ-MSASSM- 2009
14245 703 E----QE-----------------ERLR----QQRELEERIRQQQERE-QYE-REQQER- 734
47667 260 ------------------------------------------------------------ 261
57583 1736 D----EARDLLQAAQDK---LQRLQELE----GT--YEENERA----------------- 1765
59981 147 K----SKSSTSTTKKAA---GAADKKLS----KS--AAAKKNVEKKKA-DKE-KAKDAK- 190
23110 74 E----RVKDYLLMEEEF---VAAQERLRPTEDKT--EEDRSKVDDLRG------------ 112
58685 584 ----------------------------------------------------------R- 584
14284 949 E----IENKRLKAEMETRRKAAEAQRLR----QE--EEDRRAALALQE-QLE-KEAKDD- 995
72095 887 L----RKGDDVASITD--------ERAA----EL--LADRRARGPAKR-PAR-KAARKV- 925
QUERY 205 --PSGPRKAARRRQQSRCSFTTPNRPRRTLPS------SHPQKFG---GTKGRKAFE 250
0 205 --PSGPRKAARRRQQSRCSFTTPNRPRRTLPS------SHPQKFG---GTKGRKAFE 250
6011 55 --QTGPRAA-----RSACCTACPSRSRRMSTT------EGRPNFN---GVPANKDF- 94
42735 309 --SRGRATATSRRRAGRGS---PRRRRSTSRSPSTNTFKRSQRGG---GRRGR---- 353
14903 915 PCPEGGRRHHRRGSPEEAAEREPRRHRAHRHG------PDPGKEGPASGTRGER--- 962
36499 231 --RRSPRKAGKRRSPKK---------------------------------------- 245
36850 158 --PRPPAQPPRRRRHGR---------------------------------------- 172
76818 2010 --PSGSQGTRRH------AFFARSESTLTLGC------SAPEGF------------- 2039
14245 735 --EQREREELERQQRER---------------------------------------- 749
47667 260 --------------------------------------------------------- 261
57583 1764 --------------------------------------------------------- 1765
59981 191 --KTGTIKAKPTTAKAKSSATKPKTPKPKTTS------AKPKK-------------- 225
23110 111 --------------------------------------------------------- 112
58685 585 --GTGPRRAALLWNQRECGFETP-MPTRTRP-------------------------- 612
14284 996 --AKYRQQLEQERRDHELALRLANESNGQVED------SPP---------------- 1028
72095 926 --PA--KKAAKR--------------------------------------------- 933
Database: data/swissprot
Posted date: Nov 15, 1999 2:55 PM
Number of letters in database: 29,652,561
Number of sequences in database: 82,258
Lambda K H
0.317 0.133 0.395
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14679054
Number of Sequences: 82258
Number of extensions: 599117
Number of successful extensions: 1508
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1504
Number of HSP's gapped (non-prelim): 15
length of query: 250
length of database: 29,652,561
effective HSP length: 51
effective length of query: 199
effective length of database: 25,457,403
effective search space: 5066023197
effective search space used: 5066023197
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 63 (29.0 bits)
|
