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BLASTP 2.0.11 [Jan-20-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|1718062|sp|P16153|UTXA_CLODI UTXA PROTEIN
(166 letters)
Database: data/swissprot
82,258 sequences; 29,652,561 total letters
Searching..................................................done
>gi|1718062|sp|P16153|UTXA_CLODI UTXA PROTEIN
Length = 166
Score = 332 bits (843), Expect = 2e-91
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MHSSSPFYISNGNKIFFYINLGGVMNMTISFLSEHIFIKLVILTISFDTLLGCLSAIKSR 60
MHSSSPFYISNGNKIFFYINLGGVMNMTISFLSEHIFIKLVILTISFDTLLGCLSAIKSR
Sbjct: 1 MHSSSPFYISNGNKIFFYINLGGVMNMTISFLSEHIFIKLVILTISFDTLLGCLSAIKSR 60
Query: 61 KFNSSFGIDGGIRKVAMIACIFFLSVVDILTKFNFLFMLPQDCINFLRLKHLGISEFFSI 120
KFNSSFGIDGGIRKVAMIACIFFLSVVDILTKFNFLFMLPQDCINFLRLKHLGISEFFSI
Sbjct: 61 KFNSSFGIDGGIRKVAMIACIFFLSVVDILTKFNFLFMLPQDCINFLRLKHLGISEFFSI 120
Query: 121 LFILYESVSILKNMCLCGLPVPKRLKEKIAILLDAMTDEMNAKDEK 166
LFILYESVSILKNMCLCGLPVPKRLKEKIAILLDAMTDEMNAKDEK
Sbjct: 121 LFILYESVSILKNMCLCGLPVPKRLKEKIAILLDAMTDEMNAKDEK 166
>gi|140528|sp|P24811|YQXH_BACSU HYPOTHETICAL 15.7 KD PROTEIN IN
SPOIIIC-CWLA INTERGENIC REGION (ORF2)
Length = 140
Score = 39.5 bits (90), Expect = 0.004
Identities = 27/130 (20%), Positives = 55/130 (41%), Gaps = 19/130 (14%)
Query: 37 FIKLVILTISFDTLLGCLSAIKSRKFNSSFGIDGGIRKVAMIACIFFLSVVDILTKFNFL 96
++ L+++ D L G + A K +K S G +RK+ + +V+D + N
Sbjct: 26 YLDLLLVLSIIDVLTGVIKAWKFKKLRSRSAWFGYVRKLLNFFAVILANVIDTVLNLN-- 83
Query: 97 FMLPQDCINFLRLKHLGISEFFSILF-ILYESVSILKNMCLCGLPVPKRLKEKIAILLDA 155
G+ F ++LF I E +SI +N+ G+ +P + +++ + +
Sbjct: 84 ----------------GVLTFGTVLFYIANEGLSITENLAQIGVKIPSSITDRLQTIENE 127
Query: 156 MTDEMNAKDE 165
N D+
Sbjct: 128 KEQSKNNADK 137
>gi|141088|sp|P26835|YNGD_CLOPE HYPOTHETICAL 14.9 KD PROTEIN IN NAGH
3'REGION (ORFD)
Length = 132
Score = 38.7 bits (88), Expect = 0.007
Identities = 24/110 (21%), Positives = 52/110 (46%), Gaps = 18/110 (16%)
Query: 41 VILTISFDTLLGCLSAIKSRKFNSSFGIDGGIRKVAMIACIFFLSVVD-ILTKFNFLFML 99
+++ I D L G + KS++ S+ G+ G +K ++ + ++D +L ++F
Sbjct: 33 LLVFIFLDYLTGVIKGCKSKELCSNIGLRGITKKGLILVVLLVAVMLDRLLDNGTWMFRT 92
Query: 100 PQDCINFLRLKHLGISEFFSILFILYESVSILKNMCLCGLPVPKRLKEKI 149
+ +I+ E +SIL+N G+P+P++LK+ +
Sbjct: 93 -----------------LIAYFYIMNEGISILENCAALGVPIPEKLKQAL 125
>gi|6014830|sp|O78935|CYB_MARAM CYTOCHROME B
Length = 379
Score = 29.3 bits (64), Expect = 4.6
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 80 CIFFLSVVDILTKFNFLFMLPQDCINFLRLKHLGISEFFSILFILYESVSILKNMCL 136
C+F+L V D+LT ++ P + F+ + L +F+IL IL ++SI++N L
Sbjct: 323 CLFWLLVADLLT-LTWIGGQPVEH-PFITIGQLASILYFAILLILMPAISIIENNLL 377
>gi|1351589|sp|P47694|Y456_MYCGE HYPOTHETICAL PROTEIN MG456
Length = 334
Score = 29.0 bits (63), Expect = 6.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 90 LTKFNFLFMLPQDCINFLRLKHLGISEFFSILFILYESVSILKN 133
LTKFN F+ P FLR+ +G+ FS++ I + S +N
Sbjct: 4 LTKFNKFFLTPNKLNAFLRV--IGLCGLFSVIAISFGIYSYTRN 45
>gi|2496246|sp|Q57881|Y439_METJA HYPOTHETICAL ATP-BINDING PROTEIN
MJ0439
Length = 361
Score = 28.6 bits (62), Expect = 7.8
Identities = 19/56 (33%), Positives = 30/56 (52%), Gaps = 12/56 (21%)
Query: 106 FLRLKHLGIS---EFFSILFILYES----VSILKNMC-----LCGLPVPKRLKEKI 149
++ L+ + IS +F +LF YE V I+K++ LCG+P PK E+I
Sbjct: 68 YINLRGIFISKYKDFIEVLFEEYEEDRKPVEIIKSLIKDVPSLCGIPTPKNTLEEI 123
Database: data/swissprot
Posted date: Feb 2, 2000 9:39 AM
Number of letters in database: 29,652,561
Number of sequences in database: 82,258
Lambda K H
0.331 0.146 0.428
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8801581
Number of Sequences: 82258
Number of extensions: 320828
Number of successful extensions: 892
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 6
length of query: 166
length of database: 29,652,561
effective HSP length: 46
effective length of query: 120
effective length of database: 25,868,693
effective search space: 3104243160
effective search space used: 3104243160
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 62 (28.6 bits)
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