1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166
|
TBLASTN 2.0.11 [Jan-20-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|729325|sp|P39483|DHG2_BACME GLUCOSE 1-DEHYDROGENASE II
(GLCDH-II)
(261 letters)
Database: data/sts
87,792 sequences; 31,998,854 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3820341|emb|AJ229891|KLAJ9891 Kluyveromyces lactis DNA fragm... 47 1e-05
gi|1375419|gb|G27169|G27169 human STS SHGC-31983. 43 1e-04
gi|3819804|emb|AJ230012|KLAJ0012 Kluyveromyces lactis DNA fragm... 39 0.002
gi|1375215|gb|G26965|G26965 human STS SHGC-31083. 31 0.73
gi|5714409|gb|AF106665.1|AF106665 Mus musculus chromosome 6 clo... 29 2.2
gi|177714|gb|L09988|HUM4STS889 Human Chromosome 4 (clone p4-109... 29 2.2
gi|1341648|gb|G21322|G21322 human STS WI-12250. 29 3.7
>gi|3820341|emb|AJ229891|KLAJ9891 Kluyveromyces lactis DNA fragment
for sequence tagged site, clone okam5d07r [Kluyveromyces
lactis]
Length = 230
Score = 46.9 bits (109), Expect = 1e-05
Identities = 25/72 (34%), Positives = 44/72 (60%), Gaps = 3/72 (4%)
Frame = +1
Query: 108 NWNQVIDTNLTGAFLGSREAIKYFVEN---DIKGNVINMSSVHEMIPWPLFVHYAASKGG 164
+W QVIDTN+ G F + A+ + D + V+N+S+V+ ++ P Y A+K
Sbjct: 1 SWRQVIDTNINGTFYTLKYALPLMESSSSPDSEAAVVNLSAVNGLVGIPGISPYTATKHA 180
Query: 165 MKLMTETLALEYAPK 179
+ +T+++ALEYA +
Sbjct: 181 VIGITQSVALEYAER 225
>gi|1375419|gb|G27169|G27169 human STS SHGC-31983.
Length = 594
Score = 43.4 bits (100), Expect = 1e-04
Identities = 21/73 (28%), Positives = 34/73 (45%)
Frame = -1
Query: 177 APKGIRVNNIGPGAIDTPINAEKFADPEQRADVESMIPMGYIGKPEEIASVAAFLASSQA 236
AP RVN + P + T + + DP + + + P+G + E + FL S ++
Sbjct: 312 APXRXRVNAVXPXVVMTSMGQATWXDPXKAXTMLNRXPLGXFAEVEHVVKAILFLLSDRS 133
Query: 237 SYVTGITLFADGG 249
TG TL +GG
Sbjct: 132 GMTTGSTLPVEGG 94
>gi|3819804|emb|AJ230012|KLAJ0012 Kluyveromyces lactis DNA fragment
for sequence tagged site, clone okam6d01d [Kluyveromyces
lactis]
Length = 199
Score = 39.5 bits (90), Expect = 0.002
Identities = 18/49 (36%), Positives = 26/49 (52%)
Frame = -1
Query: 200 FADPEQRADVESMIPMGYIGKPEEIASVAAFLASSQASYVTGITLFADG 248
F D + + S+IPMG G P+E+ + AS ++Y TG L DG
Sbjct: 157 FVDEDLKNKWHSLIPMGREGLPQELVGAYLYFASDASTYTTGSDLLVDG 11
>gi|1375215|gb|G26965|G26965 human STS SHGC-31083.
Length = 268
Score = 30.9 bits (68), Expect = 0.73
Identities = 12/37 (32%), Positives = 19/37 (50%)
Frame = -1
Query: 214 PMGYIGKPEEIASVAAFLASSQASYVTGITLFADGGM 250
PMG G PE++ V A + +TG ++ GG+
Sbjct: 268 PMGXXGDPEDVXDVXAXXXXEXSGXITGTSVEVTGGL 158
>gi|5714409|gb|AF106665.1|AF106665 Mus musculus chromosome 6 clone
D6wum9 map between Nkrp1 and Prp strain C57BL/6J,
sequence tagged site
Length = 299
Score = 29.3 bits (64), Expect = 2.2
Identities = 17/55 (30%), Positives = 32/55 (57%), Gaps = 2/55 (3%)
Frame = -2
Query: 142 NMSSVHEMIPWPLFVHYAASKGGMKLMTETL--ALEYAPKGIRVNNIGPGAIDTPIN 196
++S +I +P F+ S G L+ +L A+ + P GI V+++GP ++ T +N
Sbjct: 172 SLSPTQYLIMFPSFLPCPLSHPGPFLLPSSLVIAVFFLPNGIEVSSLGPFSLRTLLN 2
>gi|177714|gb|L09988|HUM4STS889 Human Chromosome 4 (clone p4-1095)
STS4-889.
Length = 412
Score = 29.3 bits (64), Expect = 2.2
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1
Query: 7 DKVVVVTGGSKGLGRAMAVRFGQEQSKVVVNYRS 40
DKV V GGS+G+GRA+A ++ ++ V R+
Sbjct: 316 DKVCAVFGGSRGIGRAVAQLMARKGYRLAVIARN 215
>gi|1341648|gb|G21322|G21322 human STS WI-12250.
Length = 586
Score = 28.6 bits (62), Expect = 3.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 98 PVPSHELSLENWNQ-VIDTNLTGAFLGSREAIKYFVENDI 136
PVP ELS +W+Q + T+ T F S YF N I
Sbjct: 220 PVPMQELSKVHWSQFFLTTSPTMTFFFSHYLANYFFRNSI 339
Database: data/sts
Posted date: Feb 11, 2000 2:37 PM
Number of letters in database: 31,998,854
Number of sequences in database: 87,792
Lambda K H
0.315 0.134 0.378
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6165875
Number of Sequences: 87792
Number of extensions: 55665
Number of successful extensions: 148
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 7
length of query: 261
length of database: 10,666,284
effective HSP length: 50
effective length of query: 211
effective length of database: 6,276,684
effective search space: 1324380324
effective search space used: 1324380324
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 58 (27.0 bits)
|