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BLASTX 2.2.1 [Jul-12-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8333950|gb|BE038934.1|BE038934 AB07D09 AB Arabidopsis
thaliana cDNA 5' similar to cold-regulated protein cor47, mRNA
sequence
(738 letters)
Database: cold_tolerance_protein.fasta
19 sequences; 7312 total letters
Searching..................done
Score E
Sequences producing significant alignments: (bits) Value
gi|729204|sp|Q06396|CR13_ORYSA 13 KD COLD-INDUCED PROTEIN 21 0.78
gi|729205|sp|Q06397|CR18_ORYSA 18 KD COLD-INDUCED PROTEIN 18 5.1
>gi|729204|sp|Q06396|CR13_ORYSA 13 KD COLD-INDUCED PROTEIN
Length = 120
Score = 20.8 bits (42), Expect = 0.78
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -3
Query: 181 CCRHYSF 161
CC HYSF
Sbjct: 93 CCSHYSF 99
>gi|729205|sp|Q06397|CR18_ORYSA 18 KD COLD-INDUCED PROTEIN
Length = 156
Score = 18.1 bits (35), Expect = 5.1
Identities = 5/7 (71%), Positives = 7/7 (99%)
Frame = +3
Query: 33 HCLGVLS 53
HCLG++S
Sbjct: 54 HCLGIVS 60
Database: cold_tolerance_protein.fasta
Posted date: Sep 27, 2001 4:17 PM
Number of letters in database: 7312
Number of sequences in database: 19
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3730
Number of Sequences: 19
Number of extensions: 61
Number of successful extensions: 2
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 7312
effective HSP length: 47
effective length of database: 6419
effective search space used: 1270962
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 33 (18.0 bits)
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