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BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6273291|gb|AF191665.1|AF191665 Opuntia marenae rpl16 gene;
chloroplast gene for chloroplast product, partial intron sequence
(902 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
8,994,603 sequences; 3,078,807,967 total letters
Searching..................................................done
***** No hits found ******
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6273290|gb|AF191664.1|AF191664 Opuntia clavata rpl16 gene;
chloroplast gene for chloroplast product, partial intron sequence
(899 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
8,994,603 sequences; 3,078,807,967 total letters
Searching..................................................done
***** No hits found ******
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6273289|gb|AF191663.1|AF191663 Opuntia bradtiana rpl16 gene;
chloroplast gene for chloroplast product, partial intron sequence
(899 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
8,994,603 sequences; 3,078,807,967 total letters
Searching..................................................done
***** No hits found ******
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6273287|gb|AF191661.1|AF191661 Opuntia kuehnrichiana rpl16
gene; chloroplast gene for chloroplast product, partial intron
sequence
(895 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
8,994,603 sequences; 3,078,807,967 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAE48041.1| hypothetical protein [Nicotiana tomentosiformis] 51 8e-07
emb|CAJ32483.1| hypothetical protein [Nicotiana tabacum] >gi|777... 51 8e-07
>dbj|BAE48041.1| hypothetical protein [Nicotiana tomentosiformis]
Length = 79
Score = 51.2 bits (121), Expect(2) = 8e-07
Identities = 25/40 (62%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +2
Query: 290 MGTM*SMNTEDSIEKDP-MIHWEGWRNEPETNSSILKSDK 406
MGT +N +DSIEK MIHW GWRNEPE NS I +S+K
Sbjct: 1 MGTTELVNAKDSIEKGILMIHWSGWRNEPEINSCIRRSEK 40
Score = 27.3 bits (59), Expect(2) = 8e-07
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 423 KIDIERVNIRPRKFLFFLNCSYF 491
+I IERVNIRPRK N +
Sbjct: 48 EIGIERVNIRPRKLFLLQNLGQY 70
>emb|CAJ32483.1| hypothetical protein [Nicotiana tabacum]
dbj|BAE46692.1| hypothetical protein [Nicotiana sylvestris]
Length = 79
Score = 51.2 bits (121), Expect(2) = 8e-07
Identities = 25/40 (62%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +2
Query: 290 MGTM*SMNTEDSIEKDP-MIHWEGWRNEPETNSSILKSDK 406
MGT +N +DSIEK MIHW GWRNEPE NS I +S+K
Sbjct: 1 MGTTELVNAKDSIEKGILMIHWSGWRNEPEINSCIRRSEK 40
Score = 27.3 bits (59), Expect(2) = 8e-07
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 423 KIDIERVNIRPRKFLFFLNCSYF 491
+I IERVNIRPRK N +
Sbjct: 48 EIGIERVNIRPRKLFLLQNLGQY 70
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6273286|gb|AF191660.1|AF191660 Opuntia echinacea rpl16 gene;
chloroplast gene for chloroplast product, partial intron sequence
(893 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
8,994,603 sequences; 3,078,807,967 total letters
Searching..................................................done
***** No hits found ******
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6273285|gb|AF191659.1|AF191659 Opuntia pachypus rpl16 gene;
chloroplast gene for chloroplast product, partial intron sequence
(894 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
8,994,603 sequences; 3,078,807,967 total letters
Searching..................................................done
***** No hits found ******
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6273284|gb|AF191658.1|AF191658 Opuntia subulata rpl16 gene;
chloroplast gene for chloroplast product, partial intron sequence
(896 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
8,994,603 sequences; 3,078,807,967 total letters
Searching..................................................done
***** No hits found ******
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jun 4, 2009 5:40 PM
Number of letters in database: 3,078,807,967
Number of sequences in database: 8,994,603
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8994603
Number of Hits to DB: 25,131,630,959
Number of extensions: 479411075
Number of successful extensions: 804218
Number of sequences better than 1.0e-04: 2
Number of HSP's gapped: 803721
Number of HSP's successfully gapped: 4
Length of database: 3,078,807,967
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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