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|
BLASTX 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4104054|gb|AH007193.1|SEG_CVIGS Centaurea vallesiaca 18S
ribosomal RNA gene, partial sequence
(1002 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
8,994,603 sequences; 3,078,807,967 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABR25402.1| unknown [Oryza sativa (indica cultivar-group)] 54 2e-05
>gb|ABR25402.1| unknown [Oryza sativa (indica cultivar-group)]
Length = 26
Score = 54.3 bits (129), Expect = 2e-05
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +2
Query: 911 HMLVSKIKPCMCKYEQIQTVKLRMAH 988
HMLVSKIKPCMCKYE I+TVKLRMAH
Sbjct: 1 HMLVSKIKPCMCKYELIRTVKLRMAH 26
BLASTX 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4218935|gb|AF074388.1|AF074388 Sambucus nigra hevein-like
protein HLPf gene, partial cds
(2050 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
8,994,603 sequences; 3,078,807,967 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD12237.1| hevein-like protein HLPf [Sambucus nigra] 410 e-112
gb|AAD11408.1| hevein-like protein [Sambucus nigra] 406 e-111
gb|AAD11406.1| hevein-like protein [Sambucus nigra] 406 e-111
gb|AAD11407.1| hevein-like protein [Sambucus nigra] 395 e-108
gb|AAL30421.1|AF434174_1 hevein-like protein [Sambucus nigra] 384 e-104
gb|AAL30422.1|AF434175_1 hevein-like protein [Sambucus nigra] 279 9e-73
gb|AAO17294.1| chitinase [Ficus carica] 189 7e-46
gb|ACM45713.1| class I chitinase [Pyrus pyrifolia] 185 2e-44
dbj|BAB40817.2| endochitinase MCHT-2 [Cucumis melo] 181 2e-43
gb|ABB86300.1| chitinase [Ficus awkeotsang] 181 3e-43
>gb|AAD12237.1| hevein-like protein HLPf [Sambucus nigra]
Length = 333
Score = 410 bits (1053), Expect = e-112
Identities = 198/238 (83%), Positives = 199/238 (83%)
Frame = +1
Query: 1 MKLSTLLILSFPFLLGTIVFADDADNGPWQCGRDAGGALCHDNLCCSFWGFCGSTYQYCE 180
MKLSTLLILSFPFLLGTIVFADDADNGPWQCGRDAGGALCHDNLCCSFWGFCGSTYQYCE
Sbjct: 1 MKLSTLLILSFPFLLGTIVFADDADNGPWQCGRDAGGALCHDNLCCSFWGFCGSTYQYCE 60
Query: 181 DGCQSQCRDTSRLTDLPRALLRPTNNRNAISKMISKSLFNEMFKHMKDCPSRGFYSYEAF 360
DGCQSQCRDTSRLTDLPRALLRPTNNRNAISKMISKSLFNEMFKHMKDCPSRGFYSYEAF
Sbjct: 61 DGCQSQCRDTSRLTDLPRALLRPTNNRNAISKMISKSLFNEMFKHMKDCPSRGFYSYEAF 120
Query: 361 ITAARSFPGFCTSGDVATRKREPAAFLXXXXXXXXXXXXNLNIYLC*EIISTIYICFEIN 540
ITAARSFPGFCTSGDVATRKREPAAFL
Sbjct: 121 ITAARSFPGFCTSGDVATRKREPAAFLS-------------------------------- 148
Query: 541 LRTWMLGVGGRLDSAVVDPHAWGYCYVNGTTDEQYCTSSNWPCASGKQYNRRGPIQLT 714
+T GGRLDSAVVDPHAWGYCYVNGTTDEQYCTSSNWPCASGKQYNRRGPIQLT
Sbjct: 149 -QTSQATTGGRLDSAVVDPHAWGYCYVNGTTDEQYCTSSNWPCASGKQYNRRGPIQLT 205
Score = 267 bits (683), Expect = 3e-69
Identities = 127/127 (100%), Positives = 127/127 (100%)
Frame = +1
Query: 1669 NYNYGLAGEALGIDLVNHPDLVATDPIVSFKTAIWFWMTQHDNNPSLHDILINANSEASD 1848
NYNYGLAGEALGIDLVNHPDLVATDPIVSFKTAIWFWMTQHDNNPSLHDILINANSEASD
Sbjct: 207 NYNYGLAGEALGIDLVNHPDLVATDPIVSFKTAIWFWMTQHDNNPSLHDILINANSEASD 266
Query: 1849 QVPSYGVISKIINSNFGHQSGLDTITTSIGYYKRYCDMLEVSYGDNLENWFDETPFTKVA 2028
QVPSYGVISKIINSNFGHQSGLDTITTSIGYYKRYCDMLEVSYGDNLENWFDETPFTKVA
Sbjct: 267 QVPSYGVISKIINSNFGHQSGLDTITTSIGYYKRYCDMLEVSYGDNLENWFDETPFTKVA 326
Query: 2029 HIKMSVV 2049
HIKMSVV
Sbjct: 327 HIKMSVV 333
BLASTX 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5690369|gb|AF158246.1|AF158246 Cricetulus griseus glucose
phosphate isomerase (GPI) gene, partial intron sequence
(550 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
8,994,603 sequences; 3,078,807,967 total letters
Searching..................................................done
***** No hits found ******
BLASTX 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5049839|gb|AI730987.1|AI730987 BNLGHi8354 Six-day Cotton
fiber Gossypium hirsutum cDNA 5' similar to TUBULIN BETA-1 CHAIN
gi|486734|pir|S35142 tubulin beta chain - white lupine gi|402636
(X70184) Beta tubulin 1 [Lupinus albus], mRNA sequence
(655 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
8,994,603 sequences; 3,078,807,967 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABY86655.1| beta-tubulin 4 [Gossypium hirsutum] 408 e-112
gb|EEF51386.1| tubulin beta chain, putative [Ricinus communis] 406 e-112
ref|NP_568437.1| TUB8 (tubulin beta-8) [Arabidopsis thaliana] >g... 405 e-111
ref|XP_002271992.1| PREDICTED: hypothetical protein [Vitis vinif... 402 e-110
gb|AAK96884.1| beta tubulin [Arabidopsis thaliana] >gi|20148289|... 402 e-110
ref|XP_002267380.1| PREDICTED: hypothetical protein [Vitis vinif... 402 e-110
sp|P37392.1|TBB1_LUPAL RecName: Full=Tubulin beta-1 chain; AltNa... 402 e-110
ref|XP_002313404.1| tubulin, beta chain [Populus trichocarpa] >g... 401 e-110
gb|EEF51167.1| tubulin beta chain, putative [Ricinus communis] 400 e-110
ref|XP_002299541.1| tubulin, beta chain [Populus trichocarpa] >g... 400 e-110
>gb|ABY86655.1| beta-tubulin 4 [Gossypium hirsutum]
Length = 448
Score = 408 bits (1048), Expect = e-112
Identities = 196/201 (97%), Positives = 197/201 (98%)
Frame = +2
Query: 50 MREILHIQAGQCGNQIGANFWEVVCAEHGINSTGRYQGDNDLQLERVNVYYNEASCGRFV 229
MREILHIQAGQCGNQIGA FWEVVCAEHGI+STGRYQGDNDLQLERVNVYYNEASCGRFV
Sbjct: 1 MREILHIQAGQCGNQIGAKFWEVVCAEHGIDSTGRYQGDNDLQLERVNVYYNEASCGRFV 60
Query: 230 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSXLDVV 409
PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDS LDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 410 RKEAENCDCLQGFQVCHSLGRGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 589
RKEAENCDCLQGFQVCHSLG GTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 590 EPYNATLSVHXLVENADECMV 652
EPYNATLSVH LVENADECMV
Sbjct: 181 EPYNATLSVHQLVENADECMV 201
BLASTX 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5052071|gb|AF067555.1|AF067555 Phlox stansburyi internal
transcribed spacer 1, 5.8S ribosomal RNA gene, and internal
transcribed spacer 2, complete sequence
(623 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
8,994,603 sequences; 3,078,807,967 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAE98425.1| hypothetical protein [Arabidopsis thaliana] 94 6e-19
gb|EEH50844.1| predicted protein [Micromonas pusilla CCMP1545] 96 2e-18
ref|XP_001786502.1| predicted protein [Physcomitrella patens sub... 75 4e-12
ref|XP_001786120.1| predicted protein [Physcomitrella patens sub... 73 2e-11
ref|XP_001786259.1| predicted protein [Physcomitrella patens sub... 73 2e-11
ref|XP_001786759.1| predicted protein [Physcomitrella patens sub... 73 2e-11
ref|XP_001786133.1| predicted protein [Physcomitrella patens sub... 71 8e-11
sp|Q8TGM5|ART3_YEAST Uncharacterized protein ART3 (Antisense to ... 59 3e-07
ref|XP_001786634.1| predicted protein [Physcomitrella patens sub... 57 9e-07
ref|XP_453851.1| unnamed protein product [Kluyveromyces lactis] 56 2e-06
>dbj|BAE98425.1| hypothetical protein [Arabidopsis thaliana]
Length = 80
Score = 93.6 bits (231), Expect(2) = 6e-19
Identities = 42/48 (87%), Positives = 45/48 (93%)
Frame = +1
Query: 283 MKNVAKCDTWCELQNPVNHRVFERKLRPKPLGRGHVCLGVSHRVAPNP 426
MKNVAKCDTWCELQNPVNHRVFERKLRPKP GRGHVCLGV++R P+P
Sbjct: 1 MKNVAKCDTWCELQNPVNHRVFERKLRPKPSGRGHVCLGVTNR-RPSP 47
Score = 25.0 bits (53), Expect(2) = 6e-19
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2
Query: 455 RKLVSRALRCAVGLNKS 505
RKLVSR L AVGLN S
Sbjct: 54 RKLVSRVLPHAVGLNPS 70
BLASTX 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|3176602|gb|U78617.1|LOU78617 Lathyrus odoratus phytochrome A
(PHYA) gene, partial cds
(309 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
8,994,603 sequences; 3,078,807,967 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC18749.1| phytochrome A [Lathyrus odoratus] 213 4e-54
sp|P15001.1|PHYA_PEA RecName: Full=Phytochrome A >gi|169132|gb|A... 208 1e-52
sp|P93673.1|PHYA_LATSA RecName: Full=Phytochrome type A >gi|1848... 208 1e-52
gb|AAC18745.1| phytochrome A [Lennea melanocarpa] >gi|3176597|gb... 207 2e-52
gb|AAC18675.1| phytochrome A [Sophora affinis] 207 2e-52
gb|AAC18670.1| phytochrome A [Myrospermum sousanum] 206 5e-52
gb|AAC18750.1| phytochrome A [Hybosema robustum] 206 6e-52
gb|AAC18668.1| phytochrome A [Cyclolobium nutans] 206 8e-52
gb|AAC18709.1| phytochrome A [Millettia richardiana] 205 1e-51
gb|AAC18693.1| phytochrome A [Callerya atropurpurea] 204 2e-51
>gb|AAC18749.1| phytochrome A [Lathyrus odoratus]
Length = 103
Score = 213 bits (543), Expect = 4e-54
Identities = 103/103 (100%), Positives = 103/103 (100%)
Frame = +1
Query: 1 QAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIA 180
QAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIA
Sbjct: 1 QAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIA 60
Query: 181 SLVMAVVVNDSDEDGDSRDAVLPQKKKRLWGLVVCHNTTPRFV 309
SLVMAVVVNDSDEDGDSRDAVLPQKKKRLWGLVVCHNTTPRFV
Sbjct: 61 SLVMAVVVNDSDEDGDSRDAVLPQKKKRLWGLVVCHNTTPRFV 103
BLASTX 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5817701|gb|AF142731.1|AF142731 Wisteria frutescens
maturase-like protein (matK) gene, complete cds; chloroplast gene for
chloroplast product
(2551 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
8,994,603 sequences; 3,078,807,967 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9TKP6.1|MATK_WISFR RecName: Full=Maturase K; AltName: Full=I... 948 0.0
gb|ACB58148.1| maturase K [Wisteria frutescens] 946 0.0
gb|ACB58149.1| maturase K [Wisteria frutescens] >gi|171909148|gb... 945 0.0
gb|ACB58142.1| maturase K [Callerya megasperma] 944 0.0
gb|AAD52903.1|AF142732_1 maturase-like protein [Wisteria sinensi... 936 0.0
gb|ACB58143.1| maturase K [Wisteria brachybotrys] 928 0.0
gb|AAD52904.1|AF142733_1 maturase-like protein [Callerya reticul... 925 0.0
gb|AAD52905.1|AF142734_1 maturase-like protein [Callerya atropur... 890 0.0
gb|ABS20107.1| maturase-like protein [Astragalus uliginosus] 887 0.0
dbj|BAF57483.1| maturase [Glycyrrhiza uralensis] >gi|146197444|d... 887 0.0
>sp|Q9TKP6.1|MATK_WISFR RecName: Full=Maturase K; AltName: Full=Intron maturase
gb|AAD52902.1|AF142731_1 maturase-like protein [Wisteria frutescens]
Length = 506
Score = 948 bits (2451), Expect = 0.0
Identities = 474/506 (93%), Positives = 474/506 (93%)
Frame = +1
Query: 727 MKEYQVYLERDRSRQQDFLYPLIFREYIYGLAYSHDFNRSIFVENVGYDNKSSLLIVKRL 906
MKEYQVYLERDRSRQQDFLYPLIFREYIYGLAYSHDFNRSIFVENVGYDNKSSLLIVKRL
Sbjct: 1 MKEYQVYLERDRSRQQDFLYPLIFREYIYGLAYSHDFNRSIFVENVGYDNKSSLLIVKRL 60
Query: 907 ITRMYQQNHLIISANDSNKNPFLGYNKNFYSQIISDGFAVVVEIPFFLQLSSSLEEAEIV 1086
ITRMYQQNHLIISANDSNKNPFLGYNKNFYSQIISDGFAVVVEIPFFLQLSSSLEEAEIV
Sbjct: 61 ITRMYQQNHLIISANDSNKNPFLGYNKNFYSQIISDGFAVVVEIPFFLQLSSSLEEAEIV 120
Query: 1087 KSYHNLRSIHSIFPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDASXXXXXXXX 1266
KSYHNLRSIHSIFPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDAS
Sbjct: 121 KSYHNLRSIHSIFPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDASFFHLLRFF 180
Query: 1267 XXXXSNRNSLITPKKSISTFSKSNPRLFLFLYNFYVCEYESIFRFLRNQSSHLRLKSFSV 1446
SNRNSLITPKKSISTFSKSNPRLFLFLYNFYVCEYESIFRFLRNQSSHLRLKSFSV
Sbjct: 181 LYHFSNRNSLITPKKSISTFSKSNPRLFLFLYNFYVCEYESIFRFLRNQSSHLRLKSFSV 240
Query: 1447 FFERIFFYAKREHLVKVFPKDFSSTLTFFKDPFIHYVRYQGKSILASKNAPLLMNKWKHY 1626
FFERIFFYAKREHLVKVFPKDFSSTLTFFKDPFIHYVRYQGKSILASKNAPLLMNKWKHY
Sbjct: 241 FFERIFFYAKREHLVKVFPKDFSSTLTFFKDPFIHYVRYQGKSILASKNAPLLMNKWKHY 300
Query: 1627 FIHLWQCFFDVWSQPGTIHINQLSEHSFHFLGYFSNVRLNRSVVRSQMLQNTFLIEIVIK 1806
FIHLWQCFFDVWSQPGTIHINQLSEHSFHFLGYFSNVRLNRSVVRSQMLQNTFLIEIVIK
Sbjct: 301 FIHLWQCFFDVWSQPGTIHINQLSEHSFHFLGYFSNVRLNRSVVRSQMLQNTFLIEIVIK 360
Query: 1807 KLDIIVPIIPLIRSLAKAKFCNVLGHPLSKSVWADSSDFDIIDRFLRICRNLSHYYNGSS 1986
KLDIIVPIIPLIRSLAKAKFCNVLGHPLSKSVWADSSDFDIIDRFLRICRNLSHYYNGSS
Sbjct: 361 KLDIIVPIIPLIRSLAKAKFCNVLGHPLSKSVWADSSDFDIIDRFLRICRNLSHYYNGSS 420
Query: 1987 KKKNLYRIKYILRLSCIKTLACKHKSTVRAFLKKSGXXXXXXXXXXXXXXXXXXXXPRTS 2166
KKKNLYRIKYILRLSCIKTLACKHKSTVRAFLKKSG PRTS
Sbjct: 421 KKKNLYRIKYILRLSCIKTLACKHKSTVRAFLKKSGSEELLEEFFTEEEEILSLIFPRTS 480
Query: 2167 STLQRLHRNRIWYLDILFSNDLVNHE 2244
STLQRLHRNRIWYLDILFSNDLVNHE
Sbjct: 481 STLQRLHRNRIWYLDILFSNDLVNHE 506
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jun 4, 2009 5:40 PM
Number of letters in database: 3,078,807,967
Number of sequences in database: 8,994,603
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8994603
Number of Hits to DB: 41,405,514,078
Number of extensions: 917198245
Number of successful extensions: 2155728
Number of sequences better than 1.0e-04: 27270
Number of HSP's gapped: 2094143
Number of HSP's successfully gapped: 28318
Length of database: 3,078,807,967
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
|
