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BLASTP 2.2.26+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: NCBI Protein Reference Sequences
11,879,989 sequences; 4,140,237,112 total letters
Query= gi|16080617|ref|NP_391444.1| membrane bound lipoprotein [Bacillus
subtilis subsp. subtilis str. 168]
Length=102
Score E
Sequences producing significant alignments: (Bits) Value
ref|NP_391444.1| membrane bound lipoprotein [Bacillus subtilis s... 205 1e-66
ref|YP_003922001.1| membrane bound lipoprotein [Bacillus amyloli... 139 1e-40
ref|YP_005132038.1| lytA gene product [Bacillus amyloliquefacien... 89.0 4e-21
ref|YP_001422840.1| LytA [Bacillus amyloliquefaciens FZB42] 89.0 5e-21
ref|YP_003974994.1| unnamed protein product [Bacillus atrophaeus... 83.2 9e-19
ref|ZP_06872708.1| hypothetical protein BSU6633_03962 [Bacillus ... 78.2 9e-17
ref|YP_003973943.1| unnamed protein product [Bacillus atrophaeus... 69.7 1e-13
ref|YP_001488429.1| lipoprotein [Bacillus pumilus SAFR-032] 65.5 5e-12
ref|ZP_03053924.1| LytA [Bacillus pumilus ATCC 7061] 65.1 7e-12
ref|YP_004879120.1| membrane-bound protein LytA [Bacillus subtil... 64.3 1e-11
ref|YP_079743.1| hypothetical protein BL01515 [Bacillus lichenif... 63.5 3e-11
ref|ZP_07999323.1| YqiH protein [Bacillus sp. BT1B_CT2] 63.9 3e-11
ref|NP_390300.2| lipoprotein [Bacillus subtilis subsp. subtilis ... 58.9 1e-09
ref|YP_004877911.1| hypothetical protein GYO_2666 [Bacillus subt... 58.2 2e-09
ref|YP_004204188.1| unnamed protein product [Bacillus subtilis B... 57.0 7e-09
ref|ZP_03592187.1| hypothetical protein Bsubs1_13266 [Bacillus s... 57.0 8e-09
ref|ZP_08002186.1| hypothetical protein HMPREF1012_03225 [Bacill... 53.1 2e-07
ref|YP_080891.1| membrane bound lipoprotein [Bacillus lichenifor... 52.8 2e-07
ref|YP_003974991.1| unnamed protein product [Bacillus atrophaeus... 52.0 5e-07
ref|YP_001421840.1| hypothetical protein RBAM_022480 [Bacillus a... 49.3 3e-06
>ref|NP_391444.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis
str. 168]
ref|ZP_03593363.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis
str. 168]
ref|ZP_03597648.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
ref|ZP_03602051.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis
str. JH642]
ref|ZP_03606337.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis
str. SMY]
ref|YP_004205398.1| unnamed protein product [Bacillus subtilis BSn5]
Length=102
Score = 205 bits (521), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 102/102 (100%), Positives = 102/102 (100%), Gaps = 0/102 (0%)
Query 1 MKKFIALLFFILLLSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVDNEPV 60
MKKFIALLFFILLLSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVDNEPV
Sbjct 1 MKKFIALLFFILLLSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVDNEPV 60
Query 61 SLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERAN 102
SLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERAN
Sbjct 61 SLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERAN 102
>ref|YP_003922001.1| membrane bound lipoprotein [Bacillus amyloliquefaciens DSM 7]
Length=100
Score = 139 bits (350), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 69/102 (68%), Positives = 81/102 (79%), Gaps = 2/102 (2%)
Query 1 MKKFIALLFFILLLSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVDNEPV 60
MKK LFFILLL+GCGV ++KSQGED + TKEGTYVGLADTHTIEVTVD+EPV
Sbjct 1 MKKIFGCLFFILLLAGCGVTNEKSQGEDAG--EKLVTKEGTYVGLADTHTIEVTVDHEPV 58
Query 61 SLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERAN 102
S DITEES D+ N+G+KVT+ Y+KN +GQL+LKDIE AN
Sbjct 59 SFDITEESADDVKNLNNGEKVTVKYQKNSKGQLVLKDIEPAN 100
>ref|YP_005132038.1| lytA gene product [Bacillus amyloliquefaciens CAU-B946]
Length=105
Score = 89.0 bits (219), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/105 (46%), Positives = 69/105 (66%), Gaps = 5/105 (5%)
Query 1 MKKFIALLFFILL----LSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVD 56
MKK IA F ILL L+ CG Q +G S ++ + + YVG+ADTHTIEV VD
Sbjct 1 MKKTIAASFLILLFSVVLAACGTAEQSKKGSG-SSENQAQKETAYYVGMADTHTIEVKVD 59
Query 57 NEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERA 101
++PVS + +++ + L+KF+ DKV+ITY ND+GQ +K+IE+A
Sbjct 60 DQPVSFEFSDDFSDVLNKFSENDKVSITYFTNDKGQKEIKEIEKA 104
>ref|YP_001422840.1| LytA [Bacillus amyloliquefaciens FZB42]
Length=105
Score = 89.0 bits (219), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/105 (46%), Positives = 69/105 (66%), Gaps = 5/105 (5%)
Query 1 MKKFIALLFFILL----LSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVD 56
MKK IA F ILL L+ CG Q +G S ++ + + YVG+ADTHTIEV VD
Sbjct 1 MKKTIAASFLILLFSVVLAACGTADQSKKGSG-SSENQAQKETAYYVGMADTHTIEVKVD 59
Query 57 NEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERA 101
++PVS + +++ + L+KF+ DKV+ITY ND+GQ +K+IE+A
Sbjct 60 DQPVSFEFSDDFSDVLNKFSENDKVSITYFTNDKGQKEIKEIEKA 104
>ref|YP_003974994.1| unnamed protein product [Bacillus atrophaeus 1942]
Length=105
Score = 83.2 bits (204), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 5/104 (5%)
Query 1 MKKFIALLFFILL----LSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVD 56
MKK +A F ILL L+ CG Q +G + S S ++ + YVG+ADTHTIEV +D
Sbjct 1 MKKNVASSFLILLFSIILAACGTAEQSKEG-NGSSSSQVQNETAYYVGMADTHTIEVKID 59
Query 57 NEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIER 100
++PVS + T++ + L++F DKV I+Y ND+GQ L +IE+
Sbjct 60 DQPVSFEFTDDFSEILNEFEENDKVNISYLTNDKGQKELTEIEK 103
>ref|ZP_06872708.1| hypothetical protein BSU6633_03962 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
ref|YP_003867840.1| lytA gene product [Bacillus subtilis subsp. spizizenii str. W23]
Length=107
Score = 78.2 bits (191), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/105 (43%), Positives = 62/105 (59%), Gaps = 6/105 (6%)
Query 1 MKKFIALLF-FILLLSGCGV--NSQKSQGEDVSPDSNIE---TKEGTYVGLADTHTIEVT 54
MKKF L F +LLLS CG NS S+ S D+ E TKEGT+ GLAD+HTI VT
Sbjct 1 MKKFAILTFSMLLLLSACGTAENSSGSETNSGSQDAAAEETVTKEGTFAGLADSHTIAVT 60
Query 55 VDNEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIE 99
+D + S+ + + ++ + G KV + Y K+ G L+LKD+E
Sbjct 61 IDGKETSIQVGSDLQDKMNNISEGQKVVVKYTKDSNGVLMLKDLE 105
>ref|YP_003973943.1| unnamed protein product [Bacillus atrophaeus 1942]
Length=100
Score = 69.7 bits (169), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 58/99 (59%), Gaps = 4/99 (4%)
Query 1 MKKFIALLFFILLLSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVDNEPV 60
M++ + LLF +L+L+GCG + +Q D SP T+EG Y+G AD HTI V +D E
Sbjct 1 MRQTVLLLFGVLMLAGCGAAASANQA-DSSPKF---TQEGKYIGAADRHTIAVNIDGEEK 56
Query 61 SLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIE 99
+++ + ++ + KV + Y K+D G L L+DI+
Sbjct 57 MIEVPKNKRAECESLPDYTKVQVKYTKDDNGTLKLEDIK 95
>ref|YP_001488429.1| lipoprotein [Bacillus pumilus SAFR-032]
Length=107
Score = 65.5 bits (158), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 63/107 (59%), Gaps = 7/107 (7%)
Query 1 MKKFIALLFFILLL----SGCGVNSQKSQGEDVSPDSNIETKE--GTYVGLADTHTIEVT 54
MKK + L F ILLL + CG +++S GE+ + S + E ++G+AD HT+EV
Sbjct 1 MKKIVVLPFLILLLGIVLTACG-TAEQSSGENKTSSSTPQVLEEKAEFIGMADAHTVEVK 59
Query 55 VDNEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERA 101
N ++ + T+ L++FN GDKV I+Y ND GQ +++I++
Sbjct 60 KVNTTLNYEFTDNFKDVLNEFNPGDKVEISYFINDSGQKEIQEIKKV 106
>ref|ZP_03053924.1| LytA [Bacillus pumilus ATCC 7061]
Length=107
Score = 65.1 bits (157), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/106 (38%), Positives = 61/106 (58%), Gaps = 7/106 (7%)
Query 1 MKKFIALLFFILLL----SGCGVNSQKSQGEDVSPDSNIETKE--GTYVGLADTHTIEVT 54
MKK + L F ILLL + CG +++S GE+ + S + E ++G+AD HT+EV
Sbjct 1 MKKIVVLPFLILLLGIVLTACG-TAEQSSGENNTSSSTPQVLEEKAEFIGMADAHTVEVK 59
Query 55 VDNEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIER 100
N +S + T+ L++F GDKV I+Y ND GQ ++ IE+
Sbjct 60 KVNTTLSYEFTDNFKDVLNEFKPGDKVEISYFINDSGQKEIQKIEK 105
>ref|YP_004879120.1| membrane-bound protein LytA [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length=107
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/105 (42%), Positives = 62/105 (59%), Gaps = 6/105 (6%)
Query 1 MKKF-IALLFFILLLSGCGV--NSQKSQGEDVSPDSNIE---TKEGTYVGLADTHTIEVT 54
MKKF I + +LLLS CG NS S+ S D+ E TKEGT+ GLAD+HTI VT
Sbjct 1 MKKFAILMFSMLLLLSACGTTENSSGSETNSGSQDAAAEETVTKEGTFAGLADSHTIAVT 60
Query 55 VDNEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIE 99
+D + S+ + + ++ + G KV + Y K+ G L+LKD+E
Sbjct 61 IDGKETSIQVGSDLQDKMNSISEGQKVVVKYTKDANGVLMLKDLE 105
Lambda K H
0.310 0.131 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 102199494683
Database: NCBI Protein Reference Sequences
Posted date: Mar 18, 2012 8:41 PM
Number of letters in database: 4,140,237,112
Number of sequences in database: 11,879,989
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
|
