1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
|
psLayout version 3
match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts
match match count bases count bases name size start end name size start end count
---------------------------------------------------------------------------------------------------------------------------------------------------------------
38 3 0 0 0 0 0 0 + hg19_dna 50 9 50 chr9 141213431 85737865 85737906 1 41, 9, 85737865, acaaaggggctgggcgtggtggctcacacctgtaatcccaa, acaaaggggctgggcgcagtggctcacgcctgtaatcccaa,
41 0 0 0 0 0 0 0 + hg19_dna 50 8 49 chr8 146364022 95160479 95160520 1 41, 8, 95160479, cacaaaggggctgggcgtggtggctcacacctgtaatccca, cacaaaggggctgggcgtggtggctcacacctgtaatccca,
33 3 0 0 0 0 0 0 + hg19_dna 50 11 47 chr22 51304566 42144400 42144436 1 36, 11, 42144400, aaaggggctgggcgtggtggctcacacctgtaatcc, aaaggggctgggcgtggtagctcatgcctgtaatcc,
43 1 0 0 1 4 0 0 + hg19_dna 50 1 49 chr2 243199373 183925984 183926028 2 6,38, 1,11, 183925984,183925990, aaaaat,aaaggggctgggcgtggtggctcacacctgtaatccca, aaaaat,aaaggggctgggcgtggtggctcacgcctgtaatccca,
34 2 0 0 0 0 1 134 + hg19_dna 50 10 46 chr19 59128983 35483340 35483510 2 25,11, 10,35, 35483340,35483499, caaaggggctgggcgtggtggctca,cacctgtaatc, caaaggggctgggcgtagtggctga,cacctgtaatc,
39 0 0 0 0 0 0 0 + hg19_dna 50 10 49 chr18 78077248 23891310 23891349 1 39, 10, 23891310, caaaggggctgggcgtggtggctcacacctgtaatccca, caaaggggctgggcgtggtggctcacacctgtaatccca,
27 1 0 0 0 0 0 0 + hg19_dna 50 21 49 chr18 78077248 43252217 43252245 1 28, 21, 43252217, ggcgtggtggctcacacctgtaatccca, ggcgtggtggctcacgcctgtaatccca,
44 1 0 0 1 3 1 6 + hg19_dna 50 1 49 chr13 115169878 52759147 52759198 2 7,38, 1,11, 52759147,52759160, aaaaatt,aaaggggctgggcgtggtggctcacacctgtaatccca, aaaaatt,aaaggggctgggcgtggtggctcacgcctgtaatccca,
50 0 0 0 0 0 0 0 + hg19_dna 50 0 50 chr1 249250621 1207056 1207106 1 50, 0, 1207056, caaaaattcacaaaggggctgggcgtggtggctcacacctgtaatcccaa, caaaaattcacaaaggggctgggcgtggtggctcacacctgtaatcccaa,
31 3 0 0 0 0 0 0 + hg19_dna 50 1 35 chr1 249250621 61700837 61700871 1 34, 1, 61700837, aaaaattcacaaaggggctgggcgtggtggctca, aaaaatgaacaaaggggctgggcgcggtggctca,
28 0 0 0 1 10 1 6 - hg19_dna 50 11 49 chr4 191154276 37558157 37558191 2 10,18, 1,21, 37558157,37558173, tgggattaca,accacgcccagccccttt, tgggattaca,accacgcccagccccttt,
35 2 0 0 0 0 0 0 - hg19_dna 50 12 49 chr22 51304566 48997405 48997442 1 37, 1, 48997405, tgggattacaggtgtgagccaccacgcccagcccctt, tgggattacaggcgggagccaccacgcccagcccctt,
35 1 0 0 0 0 0 0 - hg19_dna 50 13 49 chr2 243199373 120641740 120641776 1 36, 1, 120641740, tgggattacaggtgtgagccaccacgcccagcccct, tgggattacaggcgtgagccaccacgcccagcccct,
39 0 0 0 0 0 0 0 - hg19_dna 50 10 49 chr19 59128983 54017130 54017169 1 39, 1, 54017130, tgggattacaggtgtgagccaccacgcccagcccctttg, tgggattacaggtgtgagccaccacgcccagcccctttg,
36 3 0 0 0 0 0 0 - hg19_dna 50 10 49 chr19 59128983 553742 553781 1 39, 1, 553742, tgggattacaggtgtgagccaccacgcccagcccctttg, tgggatgacaggggtgaggcaccacgcccagcccctttg,
33 3 0 0 0 0 0 0 - hg19_dna 50 13 49 chr10 135534747 99388555 99388591 1 36, 1, 99388555, tgggattacaggtgtgagccaccacgcccagcccct, tgggattataggcatgagccaccacgcccagcccct,
24 1 0 0 0 0 0 0 - hg19_dna 50 10 35 chr10 135534747 112178171 112178196 1 25, 15, 112178171, tgagccaccacgcccagcccctttg, tgagtcaccacgcccagcccctttg,
35 1 0 0 0 0 0 0 - hg19_dna 50 13 49 chr1 249250621 39368490 39368526 1 36, 1, 39368490, tgggattacaggtgtgagccaccacgcccagcccct, tgggattacaggcgtgagccaccacgcccagcccct,
33 1 0 0 0 0 0 0 - hg19_dna 50 13 47 chr1 249250621 220325687 220325721 1 34, 3, 220325687, ggattacaggtgtgagccaccacgcccagcccct, ggattacaggcgtgagccaccacgcccagcccct,
|
