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ID DS830848; SV 1; linear; genomic DNA; CON; INV; 1311 BP.
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AC DS830848;
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PR Project:PRJNA16232;
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DT 21-APR-2008 (Rel. 95, Created)
DT 18-NOV-2008 (Rel. 97, Last updated, Version 3)
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DE Ixodes scapularis 1108462666300 genomic scaffold, whole genome shotgun
DE sequence.
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KW .
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OS Ixodes scapularis (black-legged tick)
OC Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari;
OC Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes.
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RN [1]
RP 1-1311
RG Ixodes scapularis Genome Project Consortium
RA Caler E., Hannick L.I., Bidwell S., Joardar V., Thiagarajan M., Amedeo P.,
RA Galinsky K.J., Schobel S., Inman J., Hostetler J., Miller J., Hammond M.,
RA Megy K., Lawson D., Kodira C., Sutton G., Meyer J., Hill C.A., Birren B.,
RA Nene V., Collins F., Alarcon-Chaidez F., Wikel S., Strausberg R.;
RT "Annotation of Ixodes scapularis";
RL Unpublished.
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RN [2]
RP 1-1311
RG Ixodes scapularis Genome Project Consortium
RA Nene V.;
RT ;
RL Submitted (18-MAR-2008) to the INSDC.
RL J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL USA
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DR MD5; 387e72e4f7ae804780d06f875ab3bc41.
DR ENA; ABJB010000000; SET.
DR ENA; ABJB000000000; SET.
DR BioSample; SAMN03004382.
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CC This Wikel tick colony was established in 1996 using field
CC collected ticks from New York, Oklahoma and a Lyme Disease endemic
CC area of Connecticut. This colony has been continuously in-bred
CC since establishment and has not been supplemented with field
CC collected material. The colony is known to be a competent vector
CC of various Borrelia and Babesia isolates. Genomic DNA was prepared
CC from embryonated eggs.
CC The Ixodes scapularis Genome Project (IGP) is a community-based
CC effort initiated in early 2004 to sequence the I. scapularis
CC genome. The IGP is funded by the National Institute of Allergy and
CC Infectious Diseases (NIAID)/National Institute of Health as part of
CC the NIAID-funded Microbial Sequencing Centers (MSCs) at The J.
CC Craig Venter Institute (http://www.jcvi.org) and The Broad
CC Institute (http://www.broad.mit.edu/). The genome sequencing was
CC performed at both MSCs and the assembly at JCVI. The sum of all
CC reads equals 6X based on an estimated genome size of 2.1 Gbp, while
CC the coverage on assembled contigs is 3.8X. The scaffolds are
CC comprised of 570637 contigs; the other 570958 contigs in the 01
CC version of this project represent degenerate contigs that were not
CC incorporated into scaffolds. The annotation for this assembly will
CC be produced jointly by the MSCs and VectorBase
CC (http://www.vectorbase.org). Data release and use follow NIAID
CC guidelines
CC (http://www.niaid.nih.gov/dmid/genomes/mscs/data_release.htm).
CC VectorBase (www.vectorbase.org), a NIAID Bioinformatics Resource
CC Center, is responsible for the long-term curation of the assembled
CC genome sequence and its annotation. For more information, contact
CC info@vectorbase.org.
CC Assembly name: JCVI_ISG_i3_1.0
CC Coverage: 3.8x on assembled contigs; 6x based on an estimated
CC genome size of 2.1 Gbp
CC Annotation was added to the scaffolds in December 2008.
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FH Key Location/Qualifiers
FH
FT source 1..1311
FT /organism="Ixodes scapularis"
FT /strain="Wikel colony"
FT /mol_type="genomic DNA"
FT /dev_stage="embryonated eggs"
FT /db_xref="taxon:6945"
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CO join(ABJB010667125.1:1..1311)
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