File: exn_22_o_vulgar.exn

package info (click to toggle)
python-biopython 1.68%2Bdfsg-3
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 46,860 kB
  • ctags: 13,237
  • sloc: python: 160,306; xml: 93,216; ansic: 9,118; sql: 1,208; makefile: 155; sh: 63
file content (7 lines) | stat: -rw-r--r-- 1,508 bytes parent folder | download | duplicates (7) 
1
2
3
4
5
6
7
 
Command line: [exonerate -m genome2genome ../intron.fa /media/Waterloo/Downloads/genomes/scer_s288c/scer_s288c.fa --bestn 3 --showalignment no --showvulgar yes --showcigar no]
Hostname: [blackbriar]
vulgar: sacCer3_dna 529 0 - gi|330443520|ref|NC_001136.10| 1319997 1319468 - 2641 M 26 26 C 3 3 M 500 500
vulgar: sacCer3_dna 0 529 + gi|330443520|ref|NC_001136.10| 1319468 1319997 + 2641 M 90 90 C 3 3 M 436 436
vulgar: sacCer3_dna 491 162 - gi|330443489|ref|NC_001135.5| 23668 115569 + 267 M 29 29 5 0 2 I 0 8979 3 0 2 M 32 32 G 0 2 M 2 2 G 0 1 M 15 15 5 0 2 I 0 9551 3 0 2 M 3 3 G 1 0 M 5 5 G 0 2 M 3 3 G 0 1 M 4 4 G 0 1 M 18 18 S 1 1 5 0 2 I 0 55419 3 0 2 S 2 2 C 3 3 M 22 22 G 3 0 M 46 46 5 0 2 I 0 17594 3 0 2 M 14 14 G 0 1 M 9 9 G 1 0 M 15 15 G 0 3 M 17 17 G 0 3 M 1 1 G 0 1 M 13 13 G 0 1 M 6 6 G 1 0 M 12 12 G 0 2 M 45 45 G 0 1 M 6 6
vulgar: sacCer3_dna 529 78 - gi|330443667|ref|NC_001143.9| 641760 71883 - 267 M 31 31 G 3 0 M 4 4 G 2 0 M 19 19 G 0 3 M 9 9 G 0 1 M 6 6 G 1 0 M 5 5 5 2 2 I 0 154244 I 57 0 I 0 47 3 2 2 M 25 25 G 5 0 M 4 4 G 1 0 M 3 3 G 3 0 M 4 4 G 1 0 M 9 9 G 0 1 M 14 14 5 2 2 I 0 101116 I 31 0 3 2 2 M 23 23 G 0 1 M 15 15 G 1 0 M 9 9 G 1 0 M 2 2 G 1 0 M 14 14 C 18 18 S 2 2 5 0 2 I 0 177442 3 0 2 S 1 1 C 12 12 M 2 2 G 0 1 M 22 22 5 2 2 I 0 136697 I 7 0 I 0 6 I 1 0 I 0 1 I 1 0 I 0 1 I 1 0 I 0 1 I 1 0 I 0 1 I 2 0 I 0 1 I 1 0 I 0 1 I 1 0 I 0 1 I 3 0 I 0 1 I 2 0 I 0 1 I 1 0 I 0 1 I 1 0 I 0 1 I 2 0 I 0 2 I 2 0 I 0 2 I 17 0 3 2 2 M 12 12 G 2 0 M 22 22
-- completed exonerate analysis